Os12g0485500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HesB/YadR/YfhF family protein.
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Os12g0485500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HesB/YadR/YfhF family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.44 | 0.207 | 11.3 | -0.43 | 0.23 | 0.976 | -0.081 | 1.98 | -0.192 | 21.7 | 0.4652 | 1411 | -- | -- |
| 20.27 | 0.21 | 11.2 | -0.29 | 0.178 | 0.511 | -0.235 | -- | -0.155 | 21.8 | 2.917 | 1421 | -- | -- |
| 19.39 | 0.205 | 11.3 | -0.427 | 0.264 | 1 | -- | 2.06 | -0.191 | 21.8 | 0.3839 | 1397 | -- | -- |
| 20.39 | 0.21 | 11.2 | -0.275 | 0.186 | 0.501 | -- | -- | -0.149 | 21.2 | 3.037 | 1419 | -- | -- |
| 21.6 | 0.216 | 11.2 | -0.427 | -- | 1.03 | -- | 2.1 | -0.185 | -- | 0.42 | 1449 | -- | -- |
| 23.74 | 0.228 | 11.2 | -0.379 | 0.164 | -- | -0.252 | -- | -0.228 | 21.3 | -- | -- | -- | -- |
| 23.92 | 0.229 | 11.2 | -0.369 | 0.171 | -- | -- | -- | -0.227 | 20.6 | -- | -- | -- | -- |
| 21.54 | 0.216 | 11.2 | -0.274 | -- | 0.557 | -- | -- | -0.144 | -- | 3.159 | 1477 | -- | -- |
| 22.19 | 0.219 | 11.2 | -- | 0.23 | 0.635 | -- | -- | -0.114 | 21.4 | 1.304 | 1393 | -- | -- |
| 25.56 | 0.236 | 11.2 | -0.37 | -- | -- | -- | -- | -0.228 | -- | -- | -- | -- | -- |
| 27.51 | 0.245 | 11.2 | -- | 0.172 | -- | -- | -- | -0.186 | 20.5 | -- | -- | -- | -- |
| 23.33 | 0.225 | 11.2 | -- | -- | 0.661 | -- | -- | -0.101 | -- | 2.674 | 1475 | -- | -- |
| 29.17 | 0.252 | 11.2 | -- | -- | -- | -- | -- | -0.187 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.72 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 7 | 18.98 | radiation | 40 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 9 | 19.02 | temperature | 25 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 11 | 19.03 | temperature | 25 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 14 | 19.04 | temperature | 25 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 93 | 19.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 19 |
| 100 | 19.26 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 114 | 19.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 16 |
| 145 | 19.35 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 146 | 19.35 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 158 | 19.36 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 172 | 19.38 | temperature | 20 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 201 | 19.42 | temperature | 25 | 14400 | < th | dose independent | sin | 11 | NA |
| 210 | 19.43 | temperature | 25 | 14400 | > th | dose independent | sin | 11 | NA |
| 217 | 19.44 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 296 | 19.51 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 303 | 19.51 | temperature | 25 | 14400 | > th | dose dependent | sin | 11 | NA |
| 307 | 19.51 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 4 |
| 312 | 19.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 328 | 19.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 337 | 19.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 9 |
| 349 | 19.54 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 351 | 19.54 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 383 | 19.55 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 456 | 19.57 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 6 |
| 518 | 19.59 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 20 |
| 538 | 19.60 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 574 | 19.60 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 595 | 19.61 | radiation | 1 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 610 | 19.61 | temperature | 20 | 270 | > th | dose dependent | sin | 7 | NA |
| 611 | 19.61 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 859 | 19.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 905 | 19.67 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |