BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0483500 Os12g0483500|Os12g0483500
(163 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0483500 Conserved hypothetical protein 301 1e-82
Os04g0425800 104 2e-23
Os12g0639500 AAA ATPase, central region domain containing p... 84 6e-17
>Os12g0483500 Conserved hypothetical protein
Length = 163
Score = 301 bits (772), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 152/163 (93%), Positives = 152/163 (93%)
Query: 1 MALAVDDHEAVADDFRGATFHHRHHALVKNAYLPHILAEGRTVTVRNHLRRLFTDGWRRS 60
MALAVDDHEAVADDFRGATFHHRHHALVKNAYLPHILAEGRTVTVRNHLRRLFTDGWRRS
Sbjct: 1 MALAVDDHEAVADDFRGATFHHRHHALVKNAYLPHILAEGRTVTVRNHLRRLFTDGWRRS 60
Query: 61 GVAAASSEAXXXXXXXXXXXCAPTVDEFIPVNPLLGLFVITACGSTGLWKRLEVRKGGDS 120
GVAAASSEA CAPTVDEFIPVNPLLGLFVITACGSTGLWKRLEVRKGGDS
Sbjct: 61 GVAAASSEARLRRPLVVLLLCAPTVDEFIPVNPLLGLFVITACGSTGLWKRLEVRKGGDS 120
Query: 121 DGAPTRRMAWEAGRAGRASSPIITGETALVVRRWSWRLVLARF 163
DGAPTRRMAWEAGRAGRASSPIITGETALVVRRWSWRLVLARF
Sbjct: 121 DGAPTRRMAWEAGRAGRASSPIITGETALVVRRWSWRLVLARF 163
>Os04g0425800
Length = 279
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/56 (85%), Positives = 52/56 (92%)
Query: 1 MALAVDDHEAVADDFRGATFHHRHHALVKNAYLPHILAEGRTVTVRNHLRRLFTDG 56
+ALAVDDHE VADDFRGATFHHRHHALV+NAYLPH+LAEGR VTVRN RRLFT+G
Sbjct: 145 LALAVDDHEVVADDFRGATFHHRHHALVENAYLPHVLAEGRAVTVRNRQRRLFTNG 200
>Os12g0639500 AAA ATPase, central region domain containing protein
Length = 353
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 50/86 (58%), Gaps = 30/86 (34%)
Query: 1 MALAVDDHEAVADDFRGAT------------------------------FHHRHHALVKN 30
MALAVDDHEAVADDFRGAT FH RH ALV+N
Sbjct: 105 MALAVDDHEAVADDFRGATMWWRKTKALPSANVITWSPRNAERRSYRLTFHRRHRALVEN 164
Query: 31 AYLPHILAEGRTVTVRNHLRRLFTDG 56
AYLPH+LAEGR VTVRN RRLFT+
Sbjct: 165 AYLPHVLAEGRAVTVRNRQRRLFTNN 190
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,987,822
Number of extensions: 244678
Number of successful extensions: 973
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 973
Number of HSP's successfully gapped: 3
Length of query: 163
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 70
Effective length of database: 12,179,899
Effective search space: 852592930
Effective search space used: 852592930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 152 (63.2 bits)