Os12g0639500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : AAA ATPase, central region domain containing protein.
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Os12g0639500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : AAA ATPase, central region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 312.93 | 0.831 | 4.64 | 1.19 | 1.69 | -1.27 | 2.46 | -2.16 | 0.903 | 22.8 | 25.58 | 1329 | -- | -- |
| 314.78 | 0.826 | 4.58 | 1.77 | 1.7 | -1.48 | 2.2 | -- | 1.08 | 22.8 | 25.4 | 1327 | -- | -- |
| 335.65 | 0.853 | 4.63 | 1.21 | 1.63 | -1.28 | -- | -1.72 | 0.942 | 22.3 | 25.43 | 1524 | -- | -- |
| 337.22 | 0.855 | 4.59 | 1.69 | 1.62 | -1.42 | -- | -- | 1.04 | 22.5 | 25.4 | 1446 | -- | -- |
| 495.58 | 1.04 | 4.61 | 0.984 | -- | -1.12 | -- | -2.54 | 0.887 | -- | 25.3 | 1548 | -- | -- |
| 404.96 | 0.943 | 4.6 | 1.25 | 1.57 | -- | 2.13 | -- | 0.905 | 22.4 | -- | -- | -- | -- |
| 422.92 | 0.963 | 4.61 | 1.16 | 1.57 | -- | -- | -- | 0.902 | 22.2 | -- | -- | -- | -- |
| 497.79 | 1.04 | 4.52 | 1.66 | -- | -1.36 | -- | -- | 1.05 | -- | 25.31 | 1528 | -- | -- |
| 400.98 | 0.933 | 4.67 | -- | 1.64 | -1.25 | -- | -- | 0.645 | 22.3 | 28.52 | 1628 | -- | -- |
| 572.17 | 1.12 | 4.56 | 1.19 | -- | -- | -- | -- | 0.905 | -- | -- | -- | -- | -- |
| 458.65 | 1 | 4.63 | -- | 1.57 | -- | -- | -- | 0.772 | 22.2 | -- | -- | -- | -- |
| 554.43 | 1.1 | 4.58 | -- | -- | -1.51 | -- | -- | 0.837 | -- | 25.31 | 1528 | -- | -- |
| 609.3 | 1.15 | 4.59 | -- | -- | -- | -- | -- | 0.773 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 310.34 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 4 | 311.23 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 6 | 311.43 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 12 |
| 14 | 311.59 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 8 |
| 17 | 311.66 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 2 | NA |
| 19 | 311.67 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 4 | 11 |
| 118 | 313.01 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 123 | 313.04 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 124 | 313.04 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 141 | 313.35 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 142 | 313.35 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 148 | 313.41 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 168 | 313.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 9 |
| 200 | 313.80 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 247 | 314.10 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 258 | 314.16 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 262 | 314.21 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 264 | 314.22 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 265 | 314.24 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 275 | 314.30 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 293 | 314.38 | temperature | 30.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 340 | 314.52 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 361 | 314.65 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 371 | 314.67 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 404 | 314.75 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 13 |
| 430 | 314.85 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 431 | 314.86 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 436 | 314.87 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 451 | 314.89 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 488 | 315.06 | temperature | 30.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 506 | 315.17 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 627 | 315.36 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 19 |
| 629 | 315.36 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 21 |
| 634 | 315.37 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 638 | 315.37 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 656 | 315.38 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 657 | 315.39 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 669 | 315.40 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 671 | 315.41 | temperature | 30.0 | 1440 | < th | dose independent | no | NA | NA |
| 678 | 315.41 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 736 | 315.45 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 770 | 315.65 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 774 | 315.65 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 798 | 315.83 | temperature | 30.0 | 1440 | > th | dose independent | no | NA | NA |
| 922 | 316.08 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 20 | NA |
| 946 | 316.14 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 986 | 316.42 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 991 | 316.44 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 992 | 316.44 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |