BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0480100 Os12g0480100|AK120556
         (113 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0480100  Similar to One helix protein (OHP)                  190   2e-49
Os05g0292800  Similar to One helix protein (OHP)                  124   2e-29

>Os12g0480100 Similar to One helix protein (OHP)
          Length = 113

 Score =  190 bits (483), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/113 (87%), Positives = 99/113 (87%)

Query: 1   MTLLISIVQPPSLLAIQFQPLQNNRFKRNNPXXXXXXXXXXXXXXELPAGVVVPREQPKL 60
           MTLLISIVQPPSLLAIQFQPLQNNRFKRNNP              ELPAGVVVPREQPKL
Sbjct: 1   MTLLISIVQPPSLLAIQFQPLQNNRFKRNNPAISARARTVRARAAELPAGVVVPREQPKL 60

Query: 61  SEPFLGFTKTAEVWNSRACMIGLIGVFIVELVLSKGVLQTIGLEVGKGLDLPL 113
           SEPFLGFTKTAEVWNSRACMIGLIGVFIVELVLSKGVLQTIGLEVGKGLDLPL
Sbjct: 61  SEPFLGFTKTAEVWNSRACMIGLIGVFIVELVLSKGVLQTIGLEVGKGLDLPL 113



>Os05g0292800 Similar to One helix protein (OHP)
          Length = 112

 Score =  124 bits (310), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/68 (85%), Positives = 65/68 (95%)

Query: 46  ELPAGVVVPREQPKLSEPFLGFTKTAEVWNSRACMIGLIGVFIVELVLSKGVLQTIGLEV 105
           +LPAGV VPR+QPKLSEPFLGFT+TAE+WNSRACMIGLIG FIVELVL+KG+LQ IG+EV
Sbjct: 45  KLPAGVEVPRKQPKLSEPFLGFTRTAEIWNSRACMIGLIGTFIVELVLNKGILQMIGVEV 104

Query: 106 GKGLDLPL 113
           GKGLDLPL
Sbjct: 105 GKGLDLPL 112



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.142    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,238,785
Number of extensions: 101302
Number of successful extensions: 228
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 2
Length of query: 113
Length of database: 17,035,801
Length adjustment: 80
Effective length of query: 33
Effective length of database: 12,858,681
Effective search space: 424336473
Effective search space used: 424336473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)