Os12g0480100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to One helix protein (OHP).
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Os12g0480100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to One helix protein (OHP).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.72 | 0.412 | 9.54 | -0.0667 | 1.45 | -1.92 | -0.638 | 12.8 | -0.761 | 3.75 | 30.2 | 3965 | -- | -- |
| 83.21 | 0.428 | 9.74 | -2.02 | 1.37 | -0.463 | -0.454 | -- | -0.64 | 4.08 | 19.4 | 47520 | -- | -- |
| 77.89 | 0.411 | 9.54 | -0.0631 | 1.45 | -1.92 | -- | 12.8 | -0.76 | 3.83 | 30.23 | 3964 | -- | -- |
| 83.76 | 0.429 | 9.74 | -2.01 | 1.37 | -0.476 | -- | -- | -0.635 | 4.15 | 19.4 | 47520 | -- | -- |
| 176.15 | 0.622 | 9.76 | -1.86 | -- | -1.16 | -- | 2.11 | -0.749 | -- | 30.23 | 3964 | -- | -- |
| 89.61 | 0.444 | 9.76 | -2.16 | 1.43 | -- | -0.594 | -- | -0.709 | 3.88 | -- | -- | -- | -- |
| 90.6 | 0.446 | 9.75 | -2.15 | 1.43 | -- | -- | -- | -0.705 | 3.96 | -- | -- | -- | -- |
| 157.59 | 0.587 | 9.73 | -1.91 | -- | -0.698 | -- | -- | -0.53 | -- | 26.8 | 1871 | -- | -- |
| 95.93 | 0.456 | 9.59 | -- | 1.45 | -1.65 | -- | -- | -9.67e-06 | 3.89 | 19.2 | 47520 | -- | -- |
| 202.86 | 0.666 | 9.76 | -2.09 | -- | -- | -- | -- | -0.667 | -- | -- | -- | -- | -- |
| 212.53 | 0.682 | 9.7 | -- | 1.39 | -- | -- | -- | -0.466 | 3.98 | -- | -- | -- | -- |
| 210.92 | 0.676 | 9.62 | -- | -- | -1.64 | -- | -- | -0.0414 | -- | 18.44 | 47520 | -- | -- |
| 318.32 | 0.833 | 9.71 | -- | -- | -- | -- | -- | -0.435 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.83 | wind | 7 | 14400 | > th | dose independent | rect. | 20 | 15 |
| 2 | 73.85 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 3 | 73.85 | wind | 7 | 14400 | < th | dose independent | rect. | 20 | 15 |
| 4 | 74.06 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 5 | 74.22 | wind | 7 | 14400 | > th | dose dependent | rect. | 20 | 15 |
| 8 | 74.52 | wind | 7 | 14400 | > th | dose independent | sin | 8 | NA |
| 10 | 74.65 | wind | 7 | 14400 | > th | dose dependent | sin | 8 | NA |
| 11 | 74.67 | wind | 7 | 14400 | < th | dose independent | sin | 8 | NA |
| 23 | 75.11 | wind | 5 | 14400 | > th | dose independent | sin | 5 | NA |
| 31 | 75.25 | wind | 5 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 34 | 75.32 | wind | 5 | 14400 | < th | dose independent | sin | 5 | NA |
| 35 | 75.33 | wind | 5 | 14400 | > th | dose independent | rect. | 1 | 14 |
| 39 | 75.39 | wind | 5 | 14400 | > th | dose independent | rect. | 23 | 16 |
| 40 | 75.41 | wind | 5 | 14400 | < th | dose independent | rect. | 1 | 14 |
| 42 | 75.43 | wind | 5 | 14400 | > th | dose independent | rect. | 21 | 18 |
| 43 | 75.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 14 |
| 44 | 75.45 | wind | 7 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 45 | 75.46 | wind | 7 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 51 | 75.50 | wind | 5 | 14400 | > th | dose dependent | rect. | 3 | 8 |
| 60 | 75.60 | wind | 5 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 63 | 75.63 | wind | 7 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 65 | 75.66 | temperature | 10 | 90 | > th | dose dependent | sin | 21 | NA |
| 66 | 75.67 | wind | 5 | 14400 | < th | dose independent | rect. | 21 | 18 |
| 67 | 75.68 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 79 | 75.80 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 82 | 75.81 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 90 | 75.90 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 98 | 75.93 | wind | 5 | 14400 | > th | dose independent | rect. | 2 | 10 |
| 101 | 75.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 21 |
| 108 | 75.97 | wind | 5 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 109 | 75.97 | wind | 5 | 14400 | < th | dose independent | rect. | 2 | 10 |
| 113 | 75.98 | radiation | 30 | 270 | < th | dose dependent | rect. | 14 | 21 |
| 123 | 76.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 129 | 76.04 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 17 |
| 137 | 76.07 | wind | 1 | 1440 | < th | dose independent | rect. | 5 | 8 |
| 149 | 76.11 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 151 | 76.12 | wind | 1 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 161 | 76.14 | wind | 1 | 1440 | > th | dose independent | rect. | 3 | 11 |
| 168 | 76.16 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 17 |
| 187 | 76.22 | wind | 1 | 1440 | > th | dose independent | rect. | 4 | 9 |
| 211 | 76.29 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 14 |
| 219 | 76.30 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 14 |
| 225 | 76.32 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 5 |
| 246 | 76.38 | humidity | 90 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 277 | 76.47 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 8 |
| 300 | 76.54 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 352 | 76.63 | wind | 1 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 360 | 76.63 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 9 |
| 373 | 76.67 | wind | 5 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 403 | 76.75 | radiation | 20 | 270 | < th | dose independent | rect. | 15 | 19 |
| 451 | 76.87 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 19 |
| 475 | 76.93 | wind | 1 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 551 | 77.09 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 567 | 77.13 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 583 | 77.14 | humidity | 90 | 270 | < th | dose independent | rect. | 8 | 9 |
| 585 | 77.14 | temperature | 30 | 4320 | > th | dose dependent | rect. | 10 | 2 |
| 588 | 77.14 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 17 |
| 602 | 77.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 15 |
| 629 | 77.23 | wind | 5 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 655 | 77.28 | temperature | 30 | 4320 | > th | dose independent | sin | 8 | NA |
| 658 | 77.28 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 18 |
| 661 | 77.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 6 |
| 668 | 77.30 | temperature | 30 | 4320 | < th | dose independent | sin | 9 | NA |
| 671 | 77.31 | wind | 5 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 701 | 77.36 | temperature | 15 | 270 | > th | dose independent | rect. | 8 | 9 |
| 707 | 77.37 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 715 | 77.39 | wind | 5 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 778 | 77.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 17 |
| 784 | 77.46 | temperature | 30 | 720 | < th | dose independent | sin | 1 | NA |
| 824 | 77.50 | wind | 5 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 827 | 77.51 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 835 | 77.52 | wind | 9 | 14400 | > th | dose dependent | sin | 13 | NA |
| 925 | 77.62 | radiation | 40 | 720 | < th | dose independent | rect. | 19 | 16 |
| 954 | 77.66 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 22 |
| 955 | 77.66 | temperature | 30 | 4320 | > th | dose dependent | sin | 9 | NA |
| 962 | 77.67 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 14 |
| 967 | 77.68 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 971 | 77.68 | wind | 3 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 976 | 77.69 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 991 | 77.70 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 16 |