Os05g0292800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to One helix protein (OHP).
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Os05g0292800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to One helix protein (OHP).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.7 | 0.447 | 13.7 | -1.49 | 1.65 | -0.87 | 0.634 | 0.0664 | -0.867 | 5.62 | 90.97 | 242 | -- | -- |
| 90.53 | 0.443 | 13.7 | -1.49 | 1.64 | -0.927 | 0.686 | -- | -0.864 | 5.64 | 91.75 | 242 | -- | -- |
| 91.12 | 0.445 | 13.7 | -1.5 | 1.62 | -0.904 | -- | 0.602 | -0.866 | 5.61 | 91.81 | 228 | -- | -- |
| 91.6 | 0.446 | 13.7 | -1.49 | 1.63 | -0.878 | -- | -- | -0.865 | 5.62 | 91.75 | 242 | -- | -- |
| 147.84 | 0.566 | 13.7 | -1.53 | -- | 1.22 | -- | -0.522 | -0.693 | -- | 58.65 | 400 | -- | -- |
| 102.96 | 0.476 | 13.7 | -1.56 | 1.31 | -- | 0.244 | -- | -0.738 | 5.8 | -- | -- | -- | -- |
| 103.1 | 0.476 | 13.7 | -1.56 | 1.31 | -- | -- | -- | -0.739 | 5.78 | -- | -- | -- | -- |
| 148 | 0.567 | 13.7 | -1.56 | -- | 1.12 | -- | -- | -0.652 | -- | 63 | 420 | -- | -- |
| 149.39 | 0.569 | 13.7 | -- | 1.62 | -0.847 | -- | -- | -0.724 | 5.51 | 90.36 | 189 | -- | -- |
| 192.19 | 0.648 | 13.7 | -1.52 | -- | -- | -- | -- | -0.708 | -- | -- | -- | -- | -- |
| 167.41 | 0.605 | 13.6 | -- | 1.29 | -- | -- | -- | -0.565 | 5.84 | -- | -- | -- | -- |
| 209.66 | 0.674 | 13.6 | -- | -- | 1.2 | -- | -- | -0.528 | -- | 42 | 449 | -- | -- |
| 253.25 | 0.743 | 13.7 | -- | -- | -- | -- | -- | -0.539 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.25 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 2 | 86.33 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 14 | 18 |
| 3 | 86.54 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 6 | 87.05 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 14 | 87.26 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 19 | 19 |
| 18 | 87.54 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 11 | 7 |
| 24 | 87.69 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 14 | 18 |
| 26 | 87.75 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 42 | 88.16 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 21 |
| 48 | 88.30 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 11 | 19 |
| 65 | 88.73 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 8 | 17 |
| 76 | 88.82 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 14 | 18 |
| 79 | 88.84 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 87 | 88.89 | humidity | 90.0 | 90 | < th | dose independent | rect. | 19 | 19 |
| 111 | 89.18 | humidity | 50.0 | 30 | > th | dose independent | rect. | 14 | 18 |
| 124 | 89.43 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 125 | 89.44 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 136 | 89.52 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 154 | 89.70 | humidity | 50.0 | 10 | > th | dose independent | rect. | 8 | 6 |
| 180 | 89.93 | humidity | 90.0 | 270 | < th | dose independent | rect. | 17 | 18 |
| 182 | 89.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 23 |
| 184 | 89.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 192 | 89.97 | humidity | 90.0 | 10 | < th | dose independent | rect. | 8 | 6 |
| 193 | 89.97 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 204 | 90.03 | wind | 1.0 | 10 | > th | dose independent | rect. | 8 | 6 |
| 209 | 90.05 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 14 | 5 |
| 215 | 90.08 | radiation | 1.0 | 10 | > th | dose independent | rect. | 8 | 6 |
| 232 | 90.21 | radiation | 40.0 | 10 | < th | dose independent | rect. | 14 | 18 |
| 251 | 90.30 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 256 | 90.31 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 23 | 19 |
| 269 | 90.37 | wind | 9.0 | 10 | < th | dose independent | rect. | 14 | 18 |
| 280 | 90.40 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 6 |
| 282 | 90.40 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 8 | 6 |
| 283 | 90.40 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 8 | 6 |
| 284 | 90.40 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 8 | 6 |
| 285 | 90.40 | temperature | 10.0 | 10 | > th | dose independent | rect. | 14 | 18 |
| 286 | 90.40 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 8 | 6 |
| 295 | 90.46 | humidity | 80.0 | 30 | < th | dose independent | rect. | 3 | 11 |
| 301 | 90.48 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 9 |
| 312 | 90.48 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 316 | 90.50 | radiation | 1.0 | 270 | > th | dose independent | sin | 5 | NA |
| 329 | 90.53 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 363 | 90.62 | radiation | 1.0 | 270 | < th | dose independent | sin | 5 | NA |
| 378 | 90.67 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 6 |
| 387 | 90.68 | humidity | 90.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 391 | 90.69 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 395 | 90.69 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 18 |
| 416 | 90.74 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 426 | 90.76 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 17 |
| 428 | 90.76 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 17 |
| 442 | 90.80 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 454 | 90.82 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 16 | 6 |
| 461 | 90.84 | radiation | 40.0 | 10 | < th | dose independent | rect. | 12 | 20 |
| 490 | 90.88 | radiation | 1.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 515 | 90.92 | humidity | 70.0 | 10 | > th | dose dependent | sin | 4 | NA |
| 552 | 91.01 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 558 | 91.02 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 13 | 3 |
| 630 | 91.14 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 648 | 91.17 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 22 | 6 |
| 650 | 91.17 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 660 | 91.19 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 9 | 2 |
| 669 | 91.20 | atmosphere | 1005.0 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 671 | 91.20 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 673 | 91.21 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 676 | 91.21 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 678 | 91.21 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 21 | 7 |
| 679 | 91.21 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 683 | 91.21 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 689 | 91.22 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 22 | 5 |
| 696 | 91.22 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 698 | 91.23 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 699 | 91.23 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 705 | 91.23 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 720 | 91.25 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 748 | 91.28 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 760 | 91.29 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 6 |
| 765 | 91.30 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 7 |
| 797 | 91.32 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 15 |
| 801 | 91.32 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 15 |
| 821 | 91.35 | atmosphere | 1005.0 | 4320 | > th | dose dependent | rect. | 9 | 5 |
| 838 | 91.38 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 856 | 91.39 | atmosphere | 1005.0 | 4320 | > th | dose dependent | rect. | 9 | 3 |
| 866 | 91.40 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 878 | 91.42 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 9 | 2 |
| 884 | 91.42 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 901 | 91.43 | atmosphere | 1005.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 902 | 91.43 | atmosphere | 1005.0 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 907 | 91.44 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 919 | 91.44 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 922 | 91.45 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 925 | 91.45 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 15 | 8 |
| 936 | 91.46 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 8 |
| 960 | 91.48 | atmosphere | 1005.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 988 | 91.50 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 17 |