BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0292800 Os05g0292800|AK059562
         (112 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G02120.1  | chr5:419144-419633 FORWARD LENGTH=111              122   4e-29

>AT5G02120.1 | chr5:419144-419633 FORWARD LENGTH=111
          Length = 110

 Score =  122 bits (306), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 58/72 (80%), Positives = 65/72 (90%)

Query: 41  IRAAKLPAGVEVPRKQPKLSEPFLGFTRTAEIWNSRACMIGLIGTFIVELVLNKGILQMI 100
           +RAAKLP GV VP+ QPK    FLGFT+TAEIWNSRACMIGLIGTFIVEL+LNKGIL++I
Sbjct: 39  VRAAKLPEGVIVPKAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILELI 98

Query: 101 GVEVGKGLDLPL 112
           GVE+GKGLDLPL
Sbjct: 99  GVEIGKGLDLPL 110



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,215,065
Number of extensions: 80068
Number of successful extensions: 175
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 1
Length of query: 112
Length of database: 11,106,569
Length adjustment: 81
Effective length of query: 31
Effective length of database: 8,885,873
Effective search space: 275462063
Effective search space used: 275462063
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)