BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0472800 Os12g0472800|AK063278
         (378 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0472800  B repeat unit of collagen binding surface prot...   268   6e-72
Os09g0508200  Pollen Ole e 1 allergen and extensin domain co...    90   3e-18

>Os12g0472800 B repeat unit of collagen binding surface protein (cna) containing
           protein
          Length = 378

 Score =  268 bits (684), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 140/215 (65%), Positives = 140/215 (65%)

Query: 1   MEEHYTMKKPRXXXXXXXXXXXXXXXXXRGAHCESSTQXXXXXXXXXXXXXNLTVTGTVF 60
           MEEHYTMKKPR                 RGAHCESSTQ             NLTVTGTVF
Sbjct: 1   MEEHYTMKKPRLLLLSLEVILIALLLPLRGAHCESSTQGEGGGGGAGAGAANLTVTGTVF 60

Query: 61  CDACXXXXXXXXXYFLPGVKVRIDCMISVKSASKEEIKITAEKVTNTFGAYQLDIPAIDG 120
           CDAC         YFLPGVKVRIDCMISVKSASKEEIKITAEKVTNTFGAYQLDIPAIDG
Sbjct: 61  CDACSSSSFSNHSYFLPGVKVRIDCMISVKSASKEEIKITAEKVTNTFGAYQLDIPAIDG 120

Query: 121 FECXXXXXXXXXXXXXXXVIDNPSPLCNVPAVTTTVGHIXXXXXGHDHDQPNACLYNLNS 180
           FEC               VIDNPSPLCNVPAVTTTVGHI     GHDHDQPNACLYNLNS
Sbjct: 121 FECATSAAAAADSFCRAAVIDNPSPLCNVPAVTTTVGHISSSSSGHDHDQPNACLYNLNS 180

Query: 181 LYYRPXXXXXXXXXXXXXXXXDVPPAALNTSLFYC 215
           LYYRP                DVPPAALNTSLFYC
Sbjct: 181 LYYRPGGAKNGGQCGGTGGGGDVPPAALNTSLFYC 215



>Os09g0508200 Pollen Ole e 1 allergen and extensin domain containing protein
          Length = 262

 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 66/134 (49%), Gaps = 7/134 (5%)

Query: 52  NLTVTGTVFCDACXXXXXXXXXYFLPGVKVRIDCMISVKSASKEEIKITAEKVTNTFGAY 111
           N+TV G+V+CDAC         +FL G +V I C   V S   EE+ + AE+ T+  G Y
Sbjct: 35  NITVVGSVYCDACSNNTFSKHSFFLKGARVLIQCSFKVNSTMAEELSLEAERTTDQNGVY 94

Query: 112 QLDIPAIDGFECXXXXXXXXXXXXXXXVIDNPSPLCNVPAVTTTVGHIXXXXXGHDHDQP 171
           +LD+PA  GF+C               ++ + S  CNVP +  +  HI            
Sbjct: 95  KLDVPAAGGFDC--REGHDLRSACRATLVRSSSAACNVPGLRGSTQHIALRSRAT----- 147

Query: 172 NACLYNLNSLYYRP 185
           NAC  NLN+L +RP
Sbjct: 148 NACFLNLNALNFRP 161



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.132    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,194,701
Number of extensions: 121280
Number of successful extensions: 167
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 2
Length of query: 378
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 275
Effective length of database: 11,657,759
Effective search space: 3205883725
Effective search space used: 3205883725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)