Os12g0472800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : B repeat unit of collagen binding surface protein (cna) containing protein.
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Os12g0472800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : B repeat unit of collagen binding surface protein (cna) containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 221.49 | 0.699 | 6.76 | -2.98 | 4.1 | -1.98 | -2.22 | 4.45 | -0.793 | 7.42 | 26.3 | 945 | 10.3 | -- |
| 240.67 | 0.723 | 6.64 | -2.2 | 4.06 | -1.79 | -1.13 | -- | -0.459 | 7.55 | 26.7 | 976 | 10.1 | -- |
| 229.57 | 0.706 | 6.75 | -2.93 | 3.9 | -1.84 | -- | 3.82 | -0.678 | 7.25 | 26.85 | 942 | 11.3 | -- |
| 243.9 | 0.727 | 6.64 | -2.23 | 4.02 | -1.74 | -- | -- | -0.457 | 7.43 | 26.64 | 944 | 10.5 | -- |
| 295.76 | 0.801 | 6.74 | -1.81 | -- | -3.67 | -- | 0.175 | -0.236 | -- | 34.82 | 2384 | 18.1 | -- |
| 301.97 | 0.815 | 6.6 | -1.81 | 3.48 | -- | -1.23 | -- | -0.202 | 7.86 | -- | -- | -- | -- |
| 306.28 | 0.82 | 6.6 | -1.85 | 3.48 | -- | -- | -- | -0.201 | 7.82 | -- | -- | -- | -- |
| 287.61 | 0.79 | 6.67 | -1.99 | -- | -4.18 | -- | -- | -0.0945 | -- | 34.7 | 2350 | 17.7 | -- |
| 365.5 | 0.89 | 6.55 | -- | 4.11 | -1.4 | -- | -- | -0.0932 | 7.56 | 26.6 | 876 | 8.67 | -- |
| 963.54 | 1.45 | 6.68 | -1.81 | -- | -- | -- | -- | -0.153 | -- | -- | -- | -- | -- |
| 396.36 | 0.931 | 6.55 | -- | 3.47 | -- | -- | -- | 0.00481 | 7.86 | -- | -- | -- | -- |
| 389.72 | 0.919 | 6.66 | -- | -- | -3.95 | -- | -- | 0.0713 | -- | 34.7 | 2356 | 17.7 | -- |
| 1049.74 | 1.51 | 6.64 | -- | -- | -- | -- | -- | 0.0477 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 221.54 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 3 |
| 35 | 232.47 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 8 |
| 36 | 232.55 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 6 |
| 56 | 236.38 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 62 | 236.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 63 | 236.94 | wind | 3 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 68 | 237.52 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 75 | 238.02 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 4 |
| 76 | 238.14 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 82 | 238.40 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 87 | 238.53 | wind | 3 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 94 | 238.66 | humidity | 90 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 95 | 238.73 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 96 | 238.75 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 99 | 238.77 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 102 | 238.82 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 113 | 238.96 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 117 | 239.02 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 122 | 239.10 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 124 | 239.12 | radiation | 1 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 131 | 239.14 | radiation | 1 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 137 | 239.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 150 | 239.24 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 183 | 239.38 | wind | 5 | 43200 | > th | dose independent | sin | 1 | NA |
| 189 | 239.48 | wind | 5 | 43200 | < th | dose independent | sin | 1 | NA |
| 193 | 239.51 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 14 |
| 194 | 239.52 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 19 |
| 206 | 239.57 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 210 | 239.58 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 215 | 239.59 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 18 |
| 227 | 239.65 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 15 |
| 228 | 239.65 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 19 |
| 237 | 239.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 9 |
| 242 | 239.72 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 247 | 239.73 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 251 | 239.74 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 14 |
| 261 | 239.78 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 262 | 239.78 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 267 | 239.79 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 276 | 239.82 | wind | 5 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 280 | 239.82 | wind | 5 | 43200 | < th | dose independent | rect. | 7 | 15 |
| 285 | 239.83 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 10 |
| 297 | 239.89 | radiation | 1 | 43200 | > th | dose independent | sin | 12 | NA |
| 308 | 239.93 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 18 |
| 316 | 239.94 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 15 |
| 358 | 240.06 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 362 | 240.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 368 | 240.07 | wind | 5 | 43200 | > th | dose dependent | sin | 23 | NA |
| 370 | 240.09 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 461 | 240.28 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 16 |
| 500 | 240.35 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 532 | 240.41 | radiation | 1 | 43200 | < th | dose independent | sin | 10 | NA |
| 549 | 240.46 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 11 | 8 |
| 622 | 240.55 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 21 |
| 643 | 240.60 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 659 | 240.62 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 689 | 240.65 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 14 |
| 719 | 240.68 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 720 | 240.68 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 730 | 240.70 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 739 | 240.71 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 745 | 240.71 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 746 | 240.72 | radiation | 1 | 43200 | > th | dose independent | no | NA | NA |
| 806 | 240.74 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 826 | 240.75 | radiation | 1 | 43200 | < th | dose independent | rect. | 24 | 18 |
| 837 | 240.75 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 19 |
| 839 | 240.76 | radiation | 1 | 43200 | < th | dose independent | rect. | 2 | 16 |
| 912 | 240.87 | temperature | 20 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 946 | 240.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 956 | 240.93 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 6 |