BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0472800 Os12g0472800|AK063278
(378 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G41050.1 | chr5:16433478-16434076 REVERSE LENGTH=173 77 1e-14
AT3G26960.1 | chr3:9944859-9945459 REVERSE LENGTH=175 70 2e-12
AT5G13140.1 | chr5:4170688-4171744 REVERSE LENGTH=268 70 2e-12
>AT5G41050.1 | chr5:16433478-16434076 REVERSE LENGTH=173
Length = 172
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 7/135 (5%)
Query: 53 LTVTGTVFCDACXXXXXXXXXYFLPGVKVRIDCMI-SVKSASKEEIKITAEKVTNTFGAY 111
+TV G V+CD C YF+PGV+VRI C S S ++E I +A + TN G Y
Sbjct: 33 ITVMGLVYCDVCSNNSFSNHSYFIPGVEVRIICRFNSASSRTREMITFSANRTTNELGLY 92
Query: 112 QLDIPAIDGFECXXXXXXXXXXXX-XXXVIDNPSPLCNVPAVTTTVGHIXXXXXGHDHDQ 170
+LDI +++G C +I CNVP TT +
Sbjct: 93 KLDITSLEGVACAAEAKKDSLMASCQASLIGRSKDSCNVPGFRTTTEQVV-----FKSKI 147
Query: 171 PNACLYNLNSLYYRP 185
N C+Y +L +RP
Sbjct: 148 SNLCVYGFTALNFRP 162
>AT3G26960.1 | chr3:9944859-9945459 REVERSE LENGTH=175
Length = 174
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 8/134 (5%)
Query: 53 LTVTGTVFCDACXXXXXXXXXYFLPGVKVRIDCMI-SVKSASKEEIKITAEKVTNTFGAY 111
+T+ G V+CD C YF+ GV+VRI C + S + E I +A + TN FG Y
Sbjct: 37 ITIMGFVYCDVCSKNSFSKHSYFMSGVEVRIVCRFKAASSTTTETITFSANRTTNEFGLY 96
Query: 112 QLDIPAIDGFECXXXXXXXXXXXXXXXVIDNPSPLCNVPAVTTTVGHIXXXXXGHDHDQP 171
++ I ++D + + S CN+P TT + Q
Sbjct: 97 KVAISSLDCADVDSLASSCQASLIGRKNFSDSS--CNIPGYRTTTDQVL-----FKSQQS 149
Query: 172 NACLYNLNSLYYRP 185
N+C+Y N+L +RP
Sbjct: 150 NSCVYGFNALNFRP 163
>AT5G13140.1 | chr5:4170688-4171744 REVERSE LENGTH=268
Length = 267
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 7/135 (5%)
Query: 53 LTVTGTVFCDACXXXXXXXXXYFLPGVKVRIDCMISVKS-ASKEEIKITAEKVTNTFGAY 111
+TV G V+CD C YFL GV+V + C S + EE+ I+ + TN G Y
Sbjct: 39 ITVVGVVYCDTCSINTFSRQSYFLQGVEVHVTCRFKASSPKTAEEVNISVNRTTNRSGVY 98
Query: 112 QLDIPAIDGFECXXXXXXXXX-XXXXXXVIDNPSPLCNVPAVTTTVGHIXXXXXGHDHDQ 170
+L+IP +DG +C + + C++P T + Q
Sbjct: 99 KLEIPHVDGIDCVDGIAISSQCSAKILKTSSDDNGGCSIPVFQTATNEVSIKS-----KQ 153
Query: 171 PNACLYNLNSLYYRP 185
C+Y+L++L Y+P
Sbjct: 154 DRVCIYSLSALSYKP 168
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.132 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,341,841
Number of extensions: 79948
Number of successful extensions: 102
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 3
Length of query: 378
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 278
Effective length of database: 8,364,969
Effective search space: 2325461382
Effective search space used: 2325461382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)