BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0446500 Os12g0446500|012-033-C03
(632 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0446500 Conserved hypothetical protein 1096 0.0
Os04g0321600 Peptidase M24 family protein 482 e-136
AK110448 162 7e-40
>Os12g0446500 Conserved hypothetical protein
Length = 632
Score = 1096 bits (2834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/632 (85%), Positives = 541/632 (85%)
Query: 1 LTAFVSKADGDVFYSFDEEKTGSPSVKPSLNAKVMVPEKPVPKAELMLPLKENLRSHSRT 60
LTAFVSKADGDVFYSFDEEKTGSPSVKPSLNAKVMVPEKPVPKAELMLPLKENLRSHSRT
Sbjct: 1 LTAFVSKADGDVFYSFDEEKTGSPSVKPSLNAKVMVPEKPVPKAELMLPLKENLRSHSRT 60
Query: 61 PKEDLRKQLQAEILQKRTAEIAMNSNASNHKLLEGQGLRAMREPVAYKSTRDIPCSNRLE 120
PKEDLRKQLQAEILQKRTAEIAMNSNASNHKLLEGQGLRAMREPVAYKSTRDIPCSNRLE
Sbjct: 61 PKEDLRKQLQAEILQKRTAEIAMNSNASNHKLLEGQGLRAMREPVAYKSTRDIPCSNRLE 120
Query: 121 IQVDKQNEAILLPIYGVIVPFHVCTVKKAEIRGDSNRGVYVCITFNVPGTASNLQDPCLK 180
IQVDKQNEAILLPIYGVIVPFHVCTVKKAEIRGDSNRGVYVCITFNVPGTASNLQDPCLK
Sbjct: 121 IQVDKQNEAILLPIYGVIVPFHVCTVKKAEIRGDSNRGVYVCITFNVPGTASNLQDPCLK 180
Query: 181 TNANRIFLKAVTFISKDRKHADEAIQLMRIIQRGVLERAKRASLVSQERLQLCDRMTRDR 240
TNANRIFLKAVTFISKDRKHADEAIQLMRIIQRGVLERAKRASLVSQERLQLCDRMTRDR
Sbjct: 181 TNANRIFLKAVTFISKDRKHADEAIQLMRIIQRGVLERAKRASLVSQERLQLCDRMTRDR 240
Query: 241 IQLMDLWIRPTFAGRGRKSPGILVLHVNGFQYSASKSEKIEIMFCNVKHAFFQPAEKEMI 300
IQLMDLWIRPTFAGRGRKSPGILVLHVNGFQYSASKSEKIEIMFCNVKHAFFQPAEKEMI
Sbjct: 241 IQLMDLWIRPTFAGRGRKSPGILVLHVNGFQYSASKSEKIEIMFCNVKHAFFQPAEKEMI 300
Query: 301 TLLHFHLYNDIMVGNKKTRDVQFYIEVMDTVDSVGLRRRTAWDPDXXXXXXXXXXXXSGI 360
TLLHFHLYNDIMVGNKKTRDVQFYIEVMDTVDSVGLRRRTAWDPD SGI
Sbjct: 301 TLLHFHLYNDIMVGNKKTRDVQFYIEVMDTVDSVGLRRRTAWDPDEIEEEQRERARRSGI 360
Query: 361 NRQFELFVKRVNSIWSQPRFEQLGLQFETPSQKLGFNGVHGRTTCFIVPTPSCLVQLVES 420
NRQFELFVKRVNSIWSQPRFEQLGLQFETPSQKLGFNGVHGRTTCFIVPTPSCLVQLVES
Sbjct: 361 NRQFELFVKRVNSIWSQPRFEQLGLQFETPSQKLGFNGVHGRTTCFIVPTPSCLVQLVES 420
Query: 421 PFLVTSLREVDIVCLERVALGQKSFDMVFVFQDLKRDVIRIEVIPMTSIDGIKDWLNGCN 480
PFLVTSLREVDIVCLERVALGQKSFDMVFVFQDLKRDVIRIEVIPMTSIDGIKDWLNGCN
Sbjct: 421 PFLVTSLREVDIVCLERVALGQKSFDMVFVFQDLKRDVIRIEVIPMTSIDGIKDWLNGCN 480
Query: 481 LKYYESKLNLSWRKVLKEVMNNKESDENNRWEFLNPXXXXXXXXXXXXXXXXYEPXXXXX 540
LKYYESKLNLSWRKVLKEVMNNKESDENNRWEFLNP YEP
Sbjct: 481 LKYYESKLNLSWRKVLKEVMNNKESDENNRWEFLNPDASDSDSESSQTEDDQYEPSDADS 540
Query: 541 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDEMERKARXXXXXXXXXXXXXX 600
WDEMERKAR
Sbjct: 541 CSESDDEDSDSESVVDSGEDDGAMDGSEDDGGDAAESWDEMERKARDADMEMGSESDSED 600
Query: 601 XXXXXXXKALAKSRCPSHPQAKGAAHKRQRIN 632
KALAKSRCPSHPQAKGAAHKRQRIN
Sbjct: 601 ERQRRREKALAKSRCPSHPQAKGAAHKRQRIN 632
>Os04g0321600 Peptidase M24 family protein
Length = 1056
Score = 482 bits (1241), Expect = e-136, Method: Compositional matrix adjust.
Identities = 259/543 (47%), Positives = 353/543 (65%), Gaps = 23/543 (4%)
Query: 1 LTAFVSKADGDVFYSFDEEKTGSPSVKPSLNAKVMVPEKPVPKAELMLPLKENLRSHSR- 59
LTA SK DV YSF++E P K +NAK +P P K LRS ++
Sbjct: 432 LTASCSKLVKDVAYSFNDEDEVLPVKKVEVNAKEALP-----------PTKATLRSDNQE 480
Query: 60 TPKEDLRKQLQAEILQKRTAEIAMNSNASNHKLLEGQG-LRAMREPVAYKSTRDIPCSNR 118
KE+LR+Q QAE+ +++ E A +G+G R+ E VAYK+ D+P +
Sbjct: 481 MSKEELRRQHQAELARQKNEETARRLAGVGSGSGDGRGPSRSSNELVAYKNVNDVPYARE 540
Query: 119 LEIQVDKQNEAILLPIYGVIVPFHVCTVKKAEIRGDSNRGVYVCITFNVPGTASNLQDPC 178
L IQVD++NEA+LLPIYG +VPFHV TVK D NR + I FNVPG + D
Sbjct: 541 LVIQVDQKNEAVLLPIYGSMVPFHVSTVKSVTSHQD-NRTCTIRIFFNVPGMPFS-NDSN 598
Query: 179 LKTNANRIFLKAVTFISKDRKHADEAIQLMRIIQRGVL----ERAKRASLVSQERLQLCD 234
LK+ I+LK +TF SKD +H+ E +Q ++ ++R V ERA+RA+LV+QE+LQL
Sbjct: 599 LKSQG-AIYLKEITFRSKDPRHSSEVVQQIKTLRRQVASRESERAERATLVTQEKLQLTS 657
Query: 235 RMTRDRIQLMDLWIRPTFAGRGRKSPGILVLHVNGFQYSASKS-EKIEIMFCNVKHAFFQ 293
+ ++L D+WIRP F GRGRK G L HVNGF+YS S++ E+++IM+ NVKHAFFQ
Sbjct: 658 NRNKP-VRLSDVWIRPAFGGRGRKLTGTLESHVNGFRYSTSRADERVDIMYGNVKHAFFQ 716
Query: 294 PAEKEMITLLHFHLYNDIMVGNKKTRDVQFYIEVMDTVDSVGLRRRTAWDPDXXXXXXXX 353
PAEKEMITLLHFHL+N IMVGNKKT+DVQFY+EVMD V ++G RR+A DPD
Sbjct: 717 PAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGNRRSALDPDEIEEEQRE 776
Query: 354 XXXXSGINRQFELFVKRVNSIWSQPRFEQLGLQFETPSQKLGFNGVHGRTTCFIVPTPSC 413
+ IN F+ FV +VN WSQP+F+ L L+F+ P ++LGF+GV + + FI+PT +C
Sbjct: 777 RDRKNRINMDFQNFVNKVNDHWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTC 836
Query: 414 LVQLVESPFLVTSLREVDIVCLERVALGQKSFDMVFVFQDLKRDVIRIEVIPMTSIDGIK 473
LV+L+E+PFLV +L E++IV LERV G K+FDM VF+D K+DV+RI+ IP TS+D IK
Sbjct: 837 LVELIETPFLVVTLSEIEIVNLERVGFGTKNFDMAIVFKDFKKDVLRIDSIPSTSLDAIK 896
Query: 474 DWLNGCNLKYYESKLNLSWRKVLKEVMNNKES-DENNRWEFLNPXXXXXXXXXXXXXXXX 532
+WL+ +LKYYES+LNL+WR +LK ++++ + ++ WEFLN
Sbjct: 897 EWLDTTDLKYYESRLNLNWRPILKTIIDDPQKFIDDGGWEFLNMEASDSETEETEESDQG 956
Query: 533 YEP 535
YEP
Sbjct: 957 YEP 959
>AK110448
Length = 1010
Score = 162 bits (410), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 126/453 (27%), Positives = 216/453 (47%), Gaps = 31/453 (6%)
Query: 63 EDLRKQLQAEIL-QKRTAEIAMNS----NASNHKLLEGQGLRAMREPVAYKSTRDIPCSN 117
E RK Q E+L QKR A IA S +A+N + R R + + IP
Sbjct: 448 EAARKDRQRELLKQKREAWIAAGSPEGVDAANAQEDTSAIGRLARGALQSYNNSGIPAEF 507
Query: 118 RLE-IQVDKQNEAILLPIYGVIVPFHVCTVKKAEIRGDSNRGVYVCITFNVPGTASNLQD 176
+ + VD+ + ++ PI G +VPFH+ T+ K D + + +TF + +
Sbjct: 508 ASKGLAVDRARQTLIAPIAGQLVPFHISTISKVTCVPDGHGKTSLTVTF----ATTQASN 563
Query: 177 PCLKTNANRIFLKAVTFISKDRKHADEAIQLMRIIQRGVLE---RAKRASLVSQ-ERLQL 232
+ NR ++K +T++ D E + + +Q+ + + ++K++S V+ E L+L
Sbjct: 564 AAFARHRNRQWVKELTYVRPDGGFLFEIMASINEVQKMIKDLDTKSKQSSGVAPVENLKL 623
Query: 233 CDRMTRDRIQLMDLWIRPTFAGRGRKSPGILVLHVNGFQYSASKSEKIEIMFCNVKHAFF 292
R + + P +G G L H NGF++S S+ I+I + N++H F
Sbjct: 624 SPNALR--LPTAKMRPAPAQVSKGGAITGNLDAHANGFRFSFG-SQTIDIPYSNIQHFIF 680
Query: 293 QPAEKEMITLLHFHLYNDIMVGNKKTRDVQFYIEVMDTVDSVGLRRRTAWDPDXXXXXXX 352
QP+ K+++ +LH +L ++V KKT DVQF EV+++ +V R+T +
Sbjct: 681 QPSRKDIVVVLHLNLRLPMIVAGKKTDDVQFVAEVLESSVAVSGTRKT--HEEELDAEER 738
Query: 353 XXXXXSGINRQFELFVKRVNSIWSQPRFEQLGLQFETPSQKLG--FNGVHGRTTCFIVPT 410
+ N+QF F +V E+ GL E P + F GV + +
Sbjct: 739 DLARVAATNKQFSTFAMQVA--------EKHGLVLELPMKGDSNRFQGVANKKMTWFNIN 790
Query: 411 PSCLVQLVESPFLVTSLREVDIVCLERVALGQKSFDMVFVFQDLKRDVIRIEVIPMTSID 470
+ L + PF V SL ++++V LERV Q +FD +F+ +D K V I I M ++
Sbjct: 791 EHAMWSLSDLPFCVVSLDKIEVVALERVLPSQSNFDAMFIHKDYK-TVTPITNISMVHLE 849
Query: 471 GIKDWLN-GCNLKYYESKLNLSWRKVLKEVMNN 502
KDWL + Y+ES N++W +LK++ ++
Sbjct: 850 AFKDWLGESAKMIYFESTANIAWSNILKKIRDD 882
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,265,258
Number of extensions: 655457
Number of successful extensions: 1428
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1417
Number of HSP's successfully gapped: 4
Length of query: 632
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 525
Effective length of database: 11,448,903
Effective search space: 6010674075
Effective search space used: 6010674075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)