Os12g0446500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0446500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.61 | 0.228 | 10.2 | -0.264 | 0.47 | -0.403 | -0.412 | 0.143 | 0.0204 | 3.9 | 79 | 871 | -- | -- |
| 23.64 | 0.226 | 10.2 | -0.276 | 0.479 | -0.395 | -0.426 | -- | 0.0239 | 3.92 | 79 | 878 | -- | -- |
| 24.11 | 0.229 | 10.2 | -0.262 | 0.468 | -0.403 | -- | 0.102 | 0.0218 | 3.86 | 79 | 875 | -- | -- |
| 24.13 | 0.229 | 10.2 | -0.27 | 0.468 | -0.399 | -- | -- | 0.0207 | 3.88 | 78.92 | 875 | -- | -- |
| 28.58 | 0.249 | 10.2 | -0.258 | -- | -0.469 | -- | 0.174 | 0.0404 | -- | 80 | 494 | -- | -- |
| 26.43 | 0.241 | 10.2 | -0.295 | 0.527 | -- | -0.423 | -- | 0.00723 | 5.26 | -- | -- | -- | -- |
| 26.88 | 0.243 | 10.2 | -0.295 | 0.525 | -- | -- | -- | 0.0092 | 5.27 | -- | -- | -- | -- |
| 28.65 | 0.249 | 10.2 | -0.275 | -- | -0.467 | -- | -- | 0.0354 | -- | 79.79 | 494 | -- | -- |
| 26.03 | 0.238 | 10.2 | -- | 0.46 | -0.425 | -- | -- | 0.0512 | 3.78 | 78.81 | 871 | -- | -- |
| 41.26 | 0.3 | 10.2 | -0.277 | -- | -- | -- | -- | 0.0223 | -- | -- | -- | -- | -- |
| 29.18 | 0.253 | 10.2 | -- | 0.52 | -- | -- | -- | 0.0421 | 5.3 | -- | -- | -- | -- |
| 30.63 | 0.258 | 10.2 | -- | -- | -0.471 | -- | -- | 0.0659 | -- | 79.58 | 503 | -- | -- |
| 43.29 | 0.307 | 10.2 | -- | -- | -- | -- | -- | 0.0531 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.17 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 18 |
| 5 | 23.31 | radiation | 30 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 11 | 23.35 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 17 |
| 14 | 23.36 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 15 |
| 27 | 23.43 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 1 |
| 29 | 23.43 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 16 |
| 30 | 23.44 | radiation | 10 | 720 | > th | dose independent | rect. | 14 | 3 |
| 35 | 23.44 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 21 |
| 38 | 23.45 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 18 |
| 39 | 23.46 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 11 |
| 51 | 23.49 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 1 |
| 52 | 23.49 | humidity | 80 | 720 | < th | dose independent | rect. | 14 | 3 |
| 62 | 23.51 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 15 |
| 66 | 23.52 | radiation | 10 | 720 | > th | dose independent | rect. | 14 | 16 |
| 71 | 23.52 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 94 | 23.55 | humidity | 80 | 720 | < th | dose independent | sin | 18 | NA |
| 111 | 23.59 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 8 |
| 116 | 23.59 | radiation | 10 | 720 | < th | dose dependent | sin | 16 | NA |
| 118 | 23.59 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 3 |
| 119 | 23.59 | humidity | 70 | 720 | > th | dose dependent | rect. | 12 | 10 |
| 125 | 23.61 | humidity | 80 | 720 | > th | dose independent | sin | 19 | NA |
| 126 | 23.61 | radiation | 1 | 720 | > th | dose independent | sin | 17 | NA |
| 127 | 23.61 | radiation | 1 | 720 | < th | dose independent | sin | 17 | NA |
| 132 | 23.61 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 157 | 23.63 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 10 |
| 166 | 23.64 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 1 |
| 217 | 23.69 | radiation | 10 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 256 | 23.73 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 10 |
| 285 | 23.75 | humidity | 70 | 720 | > th | dose dependent | rect. | 12 | 5 |
| 295 | 23.76 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 12 |
| 301 | 23.76 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 18 |
| 360 | 23.81 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 389 | 23.82 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 21 |
| 391 | 23.82 | humidity | 70 | 720 | > th | dose dependent | rect. | 14 | 1 |
| 414 | 23.84 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 6 |
| 417 | 23.84 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 8 |
| 449 | 23.85 | humidity | 70 | 720 | > th | dose dependent | sin | 19 | NA |
| 450 | 23.85 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 458 | 23.86 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 459 | 23.86 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 518 | 23.88 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 23 |
| 530 | 23.89 | humidity | 80 | 720 | < th | dose independent | rect. | 23 | 22 |
| 575 | 23.92 | humidity | 80 | 720 | < th | dose independent | no | NA | NA |
| 577 | 23.92 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 8 |
| 588 | 23.92 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 23 |
| 618 | 23.94 | humidity | 80 | 720 | < th | dose independent | rect. | 3 | 23 |
| 651 | 23.96 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 3 |
| 672 | 23.97 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 690 | 23.98 | temperature | 25 | 270 | > th | dose independent | rect. | 2 | 3 |
| 738 | 24.00 | humidity | 80 | 720 | > th | dose independent | rect. | 21 | 23 |
| 779 | 24.02 | radiation | 10 | 720 | > th | dose independent | rect. | 11 | 6 |
| 861 | 24.05 | wind | 3 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 901 | 24.07 | wind | 3 | 1440 | < th | dose independent | rect. | 2 | 1 |