BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0446500 Os12g0446500|012-033-C03
         (632 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10710.1  | chr4:6602226-6605450 REVERSE LENGTH=1075           464   e-131
AT4G10670.1  | chr4:6584727-6585758 FORWARD LENGTH=344            342   3e-94

>AT4G10710.1 | chr4:6602226-6605450 REVERSE LENGTH=1075
          Length = 1074

 Score =  464 bits (1193), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 243/538 (45%), Positives = 341/538 (63%), Gaps = 22/538 (4%)

Query: 6   SKADGDVFYSFDEEKTGSPSVKPSLNAKVMVPEKPVPKAELMLPLKENLRSHSRT-PKED 64
           SK+  DV YSF E++      KP   A+    E  + K  L        RS      KE+
Sbjct: 450 SKSVKDVAYSFKEDEEEE---KPRKKARTSGSENYITKTAL--------RSDDHVVSKEE 498

Query: 65  LRKQLQAEILQKRTAEIAMNSNASNHKLLEGQGL-RAMREPVAYKSTRDIPCSNRLEIQV 123
           LRKQ QAE+ +++  E A      +    + +   +   + VAYK+  D+P    L IQV
Sbjct: 499 LRKQHQAELARQKNEETARRLAGDSSGAGDSRSTAKTSADVVAYKNVNDMP-HKELMIQV 557

Query: 124 DKQNEAILLPIYGVIVPFHVCTVKKAEIRGDSNRGVYVCITFNVPGTASNLQDPCLKTNA 183
           D +NEA+LLPIYG +VPFHV T++      D+NR  Y+ I FNVPGT  N  D     N 
Sbjct: 558 DTRNEAVLLPIYGSLVPFHVATIRTVSGNQDTNRNCYIRIIFNVPGTPFNPHDSNSLKNQ 617

Query: 184 NRIFLKAVTFISKDRKHADEAIQLMRIIQRGVL----ERAKRASLVSQERLQLCDRMTRD 239
             I+LK V+F +KD +H+ E  Q ++ ++R V+    ERA+RA+LV+QE+LQL     + 
Sbjct: 618 GAIYLKEVSFRTKDSRHSSEVTQQIKTLRRQVMARESERAERATLVTQEKLQLAGNKFKP 677

Query: 240 RIQLMDLWIRPTFAGRGRKSPGILVLHVNGFQYSASK-SEKIEIMFCNVKHAFFQPAEKE 298
            ++L +LWIRP F+GR +K PG L  H NGF+YS ++  E+++++F N+KHAFFQPAEKE
Sbjct: 678 -LRLSELWIRPPFSGR-KKIPGTLEAHANGFRYSTTRPDERVDVLFANIKHAFFQPAEKE 735

Query: 299 MITLLHFHLYNDIMVGNKKTRDVQFYIEVMDTVDSVGLRRRTAWDPDXXXXXXXXXXXXS 358
           MITLLHFHL+N IMVG KKT+DVQFY+EVMD V S+G  RR+A+DPD            +
Sbjct: 736 MITLLHFHLHNHIMVGTKKTKDVQFYVEVMDVVQSLGGGRRSAYDPDEIDEEQRERDRKN 795

Query: 359 GINRQFELFVKRVNSIWSQPRFEQLGLQFETPSQKLGFNGVHGRTTCFIVPTPSCLVQLV 418
            IN  F  F  RVN +W  P+F  L L+F+ P ++LGF+GV  +T+ FI+PT SCLV+L+
Sbjct: 796 KINMDFNHFANRVNDMWQLPQFASLDLEFDQPLRELGFHGVPHKTSAFIIPTSSCLVELI 855

Query: 419 ESPFLVTSLREVDIVCLERVALGQKSFDMVFVFQDLKRDVIRIEVIPMTSIDGIKDWLNG 478
           E PFLV SL E++IV LERV  GQK+FDM  +F+D K+DV+R++ +P +S++GIK+WL+ 
Sbjct: 856 EYPFLVVSLSEIEIVNLERVGFGQKNFDMAIIFKDFKKDVLRVDSVPTSSLEGIKEWLDT 915

Query: 479 CNLKYYESKLNLSWRKVLKEVMNNKES-DENNRWEFLNPXXXXXXXXXXXXXXXXYEP 535
            ++KYYESKLNL+WR++LK + ++ +S  ++  WEFLN                 YEP
Sbjct: 916 TDIKYYESKLNLNWRQILKTITDDPQSFIDDGGWEFLNLDGSDSESGGSEESDKGYEP 973



>AT4G10670.1 | chr4:6584727-6585758 FORWARD LENGTH=344
          Length = 343

 Score =  342 bits (878), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 174/352 (49%), Positives = 245/352 (69%), Gaps = 15/352 (4%)

Query: 121 IQVDKQNEAILLPIYGVIVPFHVCTVKKAEIRGDSNRGVYVCITFNVPGTASNLQDPCLK 180
           I VD +++ +LLPIYG +VPF+V T++   + G+ N    + + FNVPGT  N  D  LK
Sbjct: 2   ITVDHKSDTVLLPIYGRMVPFNVTTIRT--VLGNQN---TIRVIFNVPGTPLNPND-SLK 55

Query: 181 TNANRIFLKAVTFISKDRKHADEAIQLMRIIQRGVL----ERAKRASLVSQERLQLCDRM 236
            N + I+LK V+F +KD +H+ + +Q ++ ++R V+    ERA+R SLV+QE+LQ+  R 
Sbjct: 56  -NKDAIYLKEVSFRTKDSRHSSDVVQQVKSLRRKVMARESERAERTSLVNQEKLQIV-RN 113

Query: 237 TRDRIQLMDLWIRPTFAGRGRKSPGILVLHVNGFQYSASKSEKIEIMFCNVKHAFFQPAE 296
               + L +LWIRP F+GR +K+ G L  HVNGF+YS + +E+++++F N+KHAFFQPAE
Sbjct: 114 NSKPLSLSNLWIRPPFSGR-KKNRGTLEAHVNGFRYSTT-NERVDVLFANIKHAFFQPAE 171

Query: 297 KEMITLLHFHLYNDIMVGNKKTRDVQFYIEVMDTVDSVGLRRRT-AWDPDXXXXXXXXXX 355
           KEM TLLHFHL+N IMVG KKT+DVQFY+EVMD V S+G RRR+ A+D D          
Sbjct: 172 KEMTTLLHFHLHNHIMVGTKKTKDVQFYVEVMDVVQSLGGRRRSSAYDADEIVEEQRERD 231

Query: 356 XXSGINRQFELFVKRVNSIWSQPRFEQLGLQFETPSQKLGFNGVHGRTTCFIVPTPSCLV 415
             + IN  F  F  +VN +W  P+F  L L+F+ P ++ GFNGV  +T+ FI+PT SCLV
Sbjct: 232 RKNKINMDFNHFANQVNDMWQLPQFASLSLEFDQPLREFGFNGVPHKTSTFIIPTSSCLV 291

Query: 416 QLVESPFLVTSLREVDIVCLERVALGQKSFDMVFVFQDLKRDVIRIEVIPMT 467
           +L ESPFLV  L E++IV LERV  GQKSFDM  +F+DLK+DV+R++ +P +
Sbjct: 292 ELTESPFLVVCLSEIEIVNLERVGFGQKSFDMAIIFKDLKKDVLRVDSVPTS 343



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,484,725
Number of extensions: 454317
Number of successful extensions: 1057
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1045
Number of HSP's successfully gapped: 2
Length of query: 632
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 527
Effective length of database: 8,227,889
Effective search space: 4336097503
Effective search space used: 4336097503
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)