BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0442700 Os12g0442700|AK111062
         (110 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0442700  Hypothetical protein                                224   1e-59
Os01g0301700  Protein prenyltransferase domain containing pr...   153   2e-38

>Os12g0442700 Hypothetical protein
          Length = 110

 Score =  224 bits (570), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   WRLSQAPGSQARGLQYASPERRPLDGARWALYARLSAQLPSGGMVEELGRWLRERCPLSE 60
           WRLSQAPGSQARGLQYASPERRPLDGARWALYARLSAQLPSGGMVEELGRWLRERCPLSE
Sbjct: 1   WRLSQAPGSQARGLQYASPERRPLDGARWALYARLSAQLPSGGMVEELGRWLRERCPLSE 60

Query: 61  EQVLFCVRRFLKFKQNRHALQVSPLTPTPRHTHQTPVPSRENSGLIWIGM 110
           EQVLFCVRRFLKFKQNRHALQVSPLTPTPRHTHQTPVPSRENSGLIWIGM
Sbjct: 61  EQVLFCVRRFLKFKQNRHALQVSPLTPTPRHTHQTPVPSRENSGLIWIGM 110



>Os01g0301700 Protein prenyltransferase domain containing protein
          Length = 504

 Score =  153 bits (387), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/79 (91%), Positives = 74/79 (93%)

Query: 4  SQAPGSQARGLQYASPERRPLDGARWALYARLSAQLPSGGMVEELGRWLRERCPLSEEQV 63
          SQAP  QARGLQYASPERRPLDGARWALYARLSA LPSGGMVEELGRWLRER PLSEEQV
Sbjct: 16 SQAPRRQARGLQYASPERRPLDGARWALYARLSAHLPSGGMVEELGRWLRERRPLSEEQV 75

Query: 64 LFCVRRFLKFKQNRHALQV 82
          LFCVRRF KFKQN+HALQ+
Sbjct: 76 LFCVRRFRKFKQNKHALQL 94



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,692,433
Number of extensions: 197188
Number of successful extensions: 524
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 2
Length of query: 110
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 33
Effective length of database: 13,015,323
Effective search space: 429505659
Effective search space used: 429505659
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)