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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0301700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.31 (0.0314) R2 : 0.706
β1 : 1.47 (0.118) R2dD : 0.111 R2D : 0.13
β2 : 1.42 (0.0982) R2dC : 0.206 R2C : 0.39
β3 : 1.71 (0.142) R2dE : 0.154 R2E : 0.4
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.22 (0.07) R2dN8 : 0.00948 R2N8 : 0.00811
σ : 0.582
deviance : 156.07
__
_____
C
peak time of C : 16.3
E
wheather : temperature
threshold : 22.4
memory length : 120
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
148.17 0.572 4.31 1.52 1.47 1.6 1.66 0.33 0.228 16.4 21.9 100 -- --
148.19 0.567 4.32 1.47 1.46 1.62 1.73 -- 0.218 16.4 22.1 114 -- --
154.12 0.578 4.29 1.72 1.47 1.57 -- 1.4 0.28 16.2 21.59 128 -- --
156.07 0.582 4.31 1.47 1.42 1.71 -- -- 0.22 16.3 22.4 120 -- --
222.73 0.695 4.32 1.32 -- 2.92 -- 0.41 0.141 -- 23.99 149 -- --
191.44 0.649 4.27 1.8 2.1 -- 2.19 -- 0.472 16.2 -- -- -- --
204.93 0.67 4.26 1.82 2.11 -- -- -- 0.484 16.1 -- -- -- --
221.77 0.694 4.32 1.27 -- 2.89 -- -- 0.116 -- 23.93 148 -- --
208.77 0.673 4.37 -- 1.24 2.17 -- -- -0.021 16.5 21.64 115 -- --
446 0.987 4.25 1.74 -- -- -- -- 0.428 -- -- -- -- --
292.65 0.8 4.3 -- 2.07 -- -- -- 0.281 16.1 -- -- -- --
261.6 0.753 4.37 -- -- 3.1 -- -- -0.0968 -- 23.25 146 -- --
525.78 1.07 4.29 -- -- -- -- -- 0.235 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 138.10 temperature 20 90 > th dose dependent rect. 9 19
2 138.30 temperature 15 270 > th dose dependent rect. 7 19
3 138.54 temperature 20 10 > th dose dependent rect. 9 20
19 140.57 temperature 30 270 < th dose dependent rect. 1 21
22 140.73 temperature 30 10 < th dose dependent sin 20 NA
23 140.74 temperature 30 270 < th dose dependent rect. 2 19
38 141.67 temperature 30 90 < th dose dependent rect. 5 18
74 143.37 temperature 30 10 < th dose dependent rect. 6 16
93 144.13 temperature 15 10 > th dose dependent sin 20 NA
122 144.90 temperature 30 10 < th dose dependent rect. 8 14
138 145.39 temperature 30 90 < th dose dependent rect. 11 12
151 145.79 temperature 20 10 > th dose dependent rect. 9 11
168 146.40 temperature 10 270 > th dose dependent rect. 18 23
320 148.91 temperature 15 270 > th dose dependent rect. 7 10
348 149.19 temperature 20 90 > th dose dependent rect. 21 23
369 149.47 temperature 25 270 < th dose independent rect. 2 20
380 149.58 temperature 20 90 > th dose dependent no NA NA
447 150.22 temperature 20 10 > th dose dependent rect. 21 23
481 150.63 temperature 20 10 > th dose dependent rect. 23 23
490 150.73 temperature 30 90 < th dose dependent no NA NA
506 150.86 temperature 30 90 < th dose dependent rect. 13 23
513 150.93 temperature 30 30 < th dose dependent rect. 17 23
517 150.97 temperature 25 90 > th dose independent rect. 9 10
563 151.34 temperature 25 90 > th dose independent sin 21 NA
566 151.35 temperature 30 30 < th dose dependent rect. 15 23
573 151.43 temperature 20 10 > th dose dependent rect. 23 21
576 151.46 temperature 30 30 < th dose dependent rect. 11 23
591 151.57 temperature 20 90 > th dose dependent rect. 1 23
612 151.83 temperature 25 90 < th dose independent rect. 5 18
623 151.93 temperature 25 90 < th dose independent rect. 9 14
625 151.93 temperature 30 10 < th dose dependent rect. 2 22
626 151.94 temperature 30 90 < th dose dependent rect. 13 10
674 152.23 temperature 25 90 < th dose independent sin 20 NA
685 152.29 temperature 30 30 < th dose dependent rect. 19 23
705 152.42 temperature 30 270 < th dose dependent rect. 8 23
821 153.16 temperature 25 90 < th dose independent rect. 11 12
906 153.76 temperature 25 90 > th dose independent rect. 9 15
969 154.26 temperature 30 30 < th dose dependent rect. 21 23