BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0403800 Os12g0403800|AK064189
         (284 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0403800  Exoribonuclease domain containing protein           570   e-163
Os02g0550700  Similar to Nucleolar autoantigen-like protein       114   6e-26
Os11g0311300  Exoribonuclease domain containing protein           100   1e-21

>Os12g0403800 Exoribonuclease domain containing protein
          Length = 284

 Score =  570 bits (1468), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 284/284 (100%), Positives = 284/284 (100%)

Query: 1   MVGLSEGEKHFIRGGIAQDLRTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATV 60
           MVGLSEGEKHFIRGGIAQDLRTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATV
Sbjct: 1   MVGLSEGEKHFIRGGIAQDLRTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATV 60

Query: 61  KAELGKPSILHPDKGKVSIFVDCSPTAAPMFEGRGSEEFSAELCVALQRCLLGGKSGAGA 120
           KAELGKPSILHPDKGKVSIFVDCSPTAAPMFEGRGSEEFSAELCVALQRCLLGGKSGAGA
Sbjct: 61  KAELGKPSILHPDKGKVSIFVDCSPTAAPMFEGRGSEEFSAELCVALQRCLLGGKSGAGA 120

Query: 121 AIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVSLSATTD 180
           AIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVSLSATTD
Sbjct: 121 AIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVSLSATTD 180

Query: 181 EEPEVNVSDEEFLQFDTSSVPVIVTLTKVGKHYIVDATSEEESQMSSAVSVSVNRHGQIR 240
           EEPEVNVSDEEFLQFDTSSVPVIVTLTKVGKHYIVDATSEEESQMSSAVSVSVNRHGQIR
Sbjct: 181 EEPEVNVSDEEFLQFDTSSVPVIVTLTKVGKHYIVDATSEEESQMSSAVSVSVNRHGQIR 240

Query: 241 GLTKRGGAGLDPSVIFDMISVAKHVSRQFISVLDSETLAAEAAE 284
           GLTKRGGAGLDPSVIFDMISVAKHVSRQFISVLDSETLAAEAAE
Sbjct: 241 GLTKRGGAGLDPSVIFDMISVAKHVSRQFISVLDSETLAAEAAE 284



>Os02g0550700 Similar to Nucleolar autoantigen-like protein
          Length = 395

 Score =  114 bits (286), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 131/261 (50%), Gaps = 17/261 (6%)

Query: 7   GEKHFIRGGIAQDLRTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATVKAELGK 66
            E+ FI   +  DLR DGRR   FR + +  G   + +GSA V+LG T V+    A+L +
Sbjct: 12  NEREFIERALQSDLRVDGRRPFDFRRLKILFG---REDGSAEVQLGDTRVMGYATAQLVQ 68

Query: 67  PSILHPDKGKVSIFVDCSPTAAPMFEGRGSEEFSAELCVALQRCLLGGKSGAGAAIDLSS 126
           P    P++G ++IF + SP A P FE     E + EL   + R L   +     A+D+ S
Sbjct: 69  PYKDRPNEGTLAIFTEFSPMADPAFEPGRPGESAIELGRVVDRGLRESR-----AVDMES 123

Query: 127 LIVVDGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVSLSATTDEEPEVN 186
           L VV GK  W + +D  ++ + GNL+DA   A   ALS    P+  V      ++  +V 
Sbjct: 124 LCVVAGKHVWSVRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVG----GEDGQQVT 179

Query: 187 VSDEEF---LQFDTSSVPVIVTLTKVGKHYI--VDATSEEESQMSSAVSVSVNRHGQIRG 241
           V D E    L      +P+ VT    G+  I  +D T +EE+ M   ++ ++N +G +  
Sbjct: 180 VHDPEVRDPLPLTIHHLPIAVTFAYFGEGNIMVIDPTYKEEAVMGGRMTATINSNGDVCS 239

Query: 242 LTKRGGAGLDPSVIFDMISVA 262
           + K GG G+  SVI   + +A
Sbjct: 240 IQKAGGEGVMSSVIMQCLRIA 260



>Os11g0311300 Exoribonuclease domain containing protein
          Length = 300

 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 133/269 (49%), Gaps = 11/269 (4%)

Query: 11  FIRGGIAQDLRTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATVKAELGKPSIL 70
           F+   + + +R D RR  + R  +V    +  A+GSA VRLG T ++A++K E+  PS  
Sbjct: 24  FLERHLRESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSGE 83

Query: 71  HPDKGKVSIFVDCSPTAAPMFEGRGSEEFSAELCVALQRCLLGGKSGAGAAIDLSSLIVV 130
            PD+G +++     P  +P+       E +  +   L+  L+     +   ++L  L ++
Sbjct: 84  APDEGSIAVEFHMPPICSPLVRPGRPAEVAPVISKNLEDILM-----SSGMLNLKELCLI 138

Query: 131 DGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVS-----LSATTDE-EPE 184
            GK  W  Y+D   +++DG+L DA   +   A +   IP V+V       +   +E + +
Sbjct: 139 SGKASWLAYLDVYCLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGRVFTVGGNEGKAK 198

Query: 185 VNVSDEEFLQFDTSSVPVIVTLTKVGKHYIVDATSEEESQMSSAVSVSVNRHGQIRGLTK 244
             + + E  +   ++VP  +T      + + D T+EEES + ++V++ ++   QI  + K
Sbjct: 199 YELVNREKRKLTITNVPFSLTCALHKDNVLADPTAEEESIIETSVTIVLDSSDQIVSIQK 258

Query: 245 RGGAGLDPSVIFDMISVAKHVSRQFISVL 273
            GGA    + I + IS+AK   R+   +L
Sbjct: 259 PGGAVTSMTTIKECISLAKDRRRKLREIL 287



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.132    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,212,394
Number of extensions: 385730
Number of successful extensions: 949
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 945
Number of HSP's successfully gapped: 3
Length of query: 284
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 184
Effective length of database: 11,814,401
Effective search space: 2173849784
Effective search space used: 2173849784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)