BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0242800 Os12g0242800|AK107948
(261 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0242800 TRAM, LAG1 and CLN8 homology domain containing... 353 7e-98
Os05g0302600 TRAM, LAG1 and CLN8 homology domain containing... 153 1e-37
>Os12g0242800 TRAM, LAG1 and CLN8 homology domain containing protein
Length = 261
Score = 353 bits (906), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 195/251 (77%), Positives = 195/251 (77%)
Query: 11 SMFLPFLAMFAAIYLVGYLVVFRRWGGAQRAEASSCFASLFHGTPAAALALRAVLSNPRG 70
SMFLPFLAMFAAIYLVGYLVVFRRWGGAQRAEASSCFASLFHGTPAAALALRAVLSNPRG
Sbjct: 11 SMFLPFLAMFAAIYLVGYLVVFRRWGGAQRAEASSCFASLFHGTPAAALALRAVLSNPRG 70
Query: 71 CCVGVAGDLAAPNTRADELALDFSTAYFAVDLAHYLVLLPGERLFVAHHLATLYVXXXXX 130
CCVGVAGDLAAPNTRADELALDFSTAYFAVDLAHYLVLLPGERLFVAHHLATLYV
Sbjct: 71 CCVGVAGDLAAPNTRADELALDFSTAYFAVDLAHYLVLLPGERLFVAHHLATLYVLATCR 130
Query: 131 XXXXXXXXXXXVMEVLAEATSLAQNLWTLXXXXXXXXXXXXXXXXXXXXXFYAAYTAMRA 190
VMEVLAEATSLAQNLWTL FYAAYTAMRA
Sbjct: 131 AAARRGACALLVMEVLAEATSLAQNLWTLAGMRRAGSPAAAAAHARLSLPFYAAYTAMRA 190
Query: 191 VLGPAWFVRMVRFYYASDXXXXXXXEALPAWARASWTVVIGAGIXXXXXXXXXXXXEFFR 250
VLGPAWFVRMVRFYYASD EALPAWARASWTVVIGAGI EFFR
Sbjct: 191 VLGPAWFVRMVRFYYASDGGGGAGGEALPAWARASWTVVIGAGIVVSVLWVSNLWLEFFR 250
Query: 251 ENKRKESSKEQ 261
ENKRKESSKEQ
Sbjct: 251 ENKRKESSKEQ 261
>Os05g0302600 TRAM, LAG1 and CLN8 homology domain containing protein
Length = 256
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 124/245 (50%), Gaps = 10/245 (4%)
Query: 16 FLAMFAAIYLVGYLVVFRRWGGAQRAEASSCFASLFHGTPAAALALRAVLSNPRGCCVGV 75
FLAM+AAIY VG L + RRW R + +SC SL HGTPAA A A+L+ P
Sbjct: 21 FLAMYAAIYCVGQLALLRRWAWPLRLDGASCLISLAHGTPAALAAAGAILALPPE----- 75
Query: 76 AGDLAAPNTRADELALDFSTAYFAVDLAHYLVLLPGERLFVAHHLATLYVXXXXXXXXXX 135
A AAPNTR + LD+S AYF +DL HYL LPG+ LF+AHH+ATL+V
Sbjct: 76 ARGFAAPNTRLQDHVLDYSVAYFTMDLLHYLAFLPGDTLFIAHHVATLFVFVTCRYLVRH 135
Query: 136 XXXXXXVMEVLAEATSLAQNLWTLXXXXXXXXXXXXXXXXXXXXXFYAAYTAMRAVLGPA 195
V+ VLAE TSL QN+WTL FY YT +R V GP
Sbjct: 136 GAYALLVLLVLAEVTSLLQNVWTLAGIWRAEKPAAARVYRALSPPFYFIYTVVRGVAGPL 195
Query: 196 WFVRMVRFYYASDXXXXXXXEALPAWARASWTVVIGAGIXXXXXXXXXXXXEFFRENKRK 255
+F++M FY + + +P W R SW VV+G I E FRE K+
Sbjct: 196 FFLKMSLFYLSGQ-----AVDVIPWWVRISWIVVVGTAITVSNLWIWNLWKELFRERKQS 250
Query: 256 ESSKE 260
+ K
Sbjct: 251 MTKKS 255
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,079,777
Number of extensions: 197075
Number of successful extensions: 485
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 2
Length of query: 261
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 162
Effective length of database: 11,866,615
Effective search space: 1922391630
Effective search space used: 1922391630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 155 (64.3 bits)