Os12g0242800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAM, LAG1 and CLN8 homology domain containing protein.
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Os12g0242800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAM, LAG1 and CLN8 homology domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.77 | 0.465 | 9.89 | -0.368 | 0.932 | -1.21 | 1.24 | 1.72 | -0.129 | 1.01 | 19.18 | 7478 | -- | -- |
| 92.16 | 0.447 | 9.94 | -0.0139 | 0.941 | -1.6 | 1.49 | -- | -0.0754 | 0.868 | 14.1 | 24829 | -- | -- |
| 96.41 | 0.457 | 9.84 | 0.233 | 0.963 | -1.59 | -- | 1.32 | 0.0698 | 0.958 | 15.1 | 24227 | -- | -- |
| 97.48 | 0.46 | 9.93 | -0.0399 | 0.971 | -1.76 | -- | -- | -0.0616 | 0.963 | 13.34 | 24328 | -- | -- |
| 142.31 | 0.559 | 10 | -1.24 | -- | -1.9 | -- | -0.167 | -0.433 | -- | 15.1 | 24227 | -- | -- |
| 141.65 | 0.558 | 10.1 | -1.56 | 0.903 | -- | 1.17 | -- | -0.699 | 1.02 | -- | -- | -- | -- |
| 147.31 | 0.568 | 10.1 | -1.61 | 0.901 | -- | -- | -- | -0.704 | 0.922 | -- | -- | -- | -- |
| 142.33 | 0.558 | 10 | -1.22 | -- | -1.9 | -- | -- | -0.426 | -- | 15.1 | 24227 | -- | -- |
| 97.36 | 0.46 | 9.92 | -- | 0.993 | -1.78 | -- | -- | -0.0362 | 0.962 | 12.02 | 24270 | -- | -- |
| 197.86 | 0.657 | 10.1 | -1.57 | -- | -- | -- | -- | -0.687 | -- | -- | -- | -- | -- |
| 215.25 | 0.686 | 10 | -- | 0.875 | -- | -- | -- | -0.526 | 0.843 | -- | -- | -- | -- |
| 153.57 | 0.577 | 9.91 | -- | -- | -1.72 | -- | -- | -0.0368 | -- | 4.559 | 24749 | -- | -- |
| 263.06 | 0.757 | 10 | -- | -- | -- | -- | -- | -0.513 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.68 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 3 | 87.71 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 5 | 88.05 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 6 | 88.05 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 9 | 88.14 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 3 | 14 |
| 12 | 88.16 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 13 | 88.16 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 4 | 15 |
| 14 | 88.17 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 18 | 88.21 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 22 | 88.28 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 23 | 88.29 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 50 | 88.57 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 1 | NA |
| 55 | 88.63 | humidity | 90.0 | 43200 | > th | dose independent | sin | 2 | NA |
| 67 | 88.69 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 89 | 88.86 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 107 | 88.96 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 108 | 88.96 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 112 | 88.99 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 123 | 89.06 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 135 | 89.13 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 160 | 89.30 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 210 | 89.52 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 253 | 89.81 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 268 | 89.89 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 9 |
| 280 | 89.95 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 283 | 89.95 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 9 |
| 294 | 90.01 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 312 | 90.12 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 6 | 18 |
| 328 | 90.18 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 2 | 17 |
| 354 | 90.26 | humidity | 90.0 | 43200 | < th | dose independent | sin | 2 | NA |
| 368 | 90.29 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 385 | 90.33 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 388 | 90.33 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 437 | 90.52 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 524 | 90.74 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 586 | 90.92 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 6 | 22 |
| 592 | 90.94 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 606 | 90.96 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 13 |
| 623 | 90.99 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 624 | 90.99 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 630 | 91.01 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 657 | 91.07 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 21 |
| 661 | 91.09 | wind | 7.0 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 687 | 91.16 | wind | 7.0 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 695 | 91.17 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 697 | 91.17 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 706 | 91.19 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 3 | 10 |
| 719 | 91.21 | humidity | 90.0 | 43200 | > th | dose independent | no | NA | NA |
| 726 | 91.22 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 732 | 91.24 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 737 | 91.24 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 744 | 91.25 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 760 | 91.27 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 767 | 91.28 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 799 | 91.33 | humidity | 90.0 | 43200 | > th | dose dependent | no | NA | NA |
| 814 | 91.36 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 824 | 91.38 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 840 | 91.40 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 855 | 91.41 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 862 | 91.43 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 863 | 91.43 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 867 | 91.43 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 881 | 91.44 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 6 | 6 |
| 907 | 91.46 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 915 | 91.48 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 916 | 91.48 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 988 | 91.57 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 9 |