BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0242800 Os12g0242800|AK107948
(261 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G25950.1 | chr3:9496356-9497111 FORWARD LENGTH=252 144 4e-35
AT5G14280.1 | chr5:4609123-4611444 FORWARD LENGTH=573 142 2e-34
AT3G27270.1 | chr3:10073315-10074064 FORWARD LENGTH=250 123 1e-28
>AT3G25950.1 | chr3:9496356-9497111 FORWARD LENGTH=252
Length = 251
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 117/247 (47%), Gaps = 10/247 (4%)
Query: 13 FLPFLAMFAAIYLVGYLVVFRRWGGAQRAEASSCFASLFHGTPAAALALRAVLSNPRGCC 72
F FL +F A+Y +GY +VFR W + AS C SLFHGTPA +A A+L+ PR
Sbjct: 15 FPSFLLLFLAVYTIGYFLVFRTWKQSSHLGAS-CLMSLFHGTPAVIMASHALLTTPRADV 73
Query: 73 VGVAGDLAAPNTRADELALDFSTAYFAVDLAHYLVLLPGERLFVAHHLATLYVXXXXXXX 132
A+PNT + LDFS AYF VDL HYL+ LP + +F+ HH+ATLYV
Sbjct: 74 ----HSFASPNTAVESNVLDFSMAYFTVDLLHYLIFLPNDFIFILHHIATLYVFATCRFA 129
Query: 133 XXXXXXXXXVMEVLAEATSLAQNLWTLXXXXXXXXXXXXXXXXXXXXXFYAAYTAMRAVL 192
++ +LAEATS QN+WT+ FY YT +R +
Sbjct: 130 VGHGAHGLLLLLILAEATSACQNVWTITGYRKNDVALARRVRELLSPPFYLFYTVVRGLA 189
Query: 193 GPAWFVRMVRFYYASDXXXXXXXEALPAWARASWTVVIGAGIXXXXXXXXXXXXEFFREN 252
GP M FY + +P WA SW VVIG I ++FREN
Sbjct: 190 GPVVLYDMATFYGSG-----AADGVVPRWAWLSWLVVIGFAILVSILWVLRNWLDWFREN 244
Query: 253 KRKESSK 259
+ K
Sbjct: 245 NSSKKYK 251
>AT5G14280.1 | chr5:4609123-4611444 FORWARD LENGTH=573
Length = 572
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/243 (37%), Positives = 112/243 (46%), Gaps = 15/243 (6%)
Query: 14 LP-FLAMFAAIYLVGYLVVFRRWGGAQRAEASSCFASLFHGTPAAALALRAVLSNPRGCC 72
LP F +MF IYL+ Y +VFR W R EASSC S+FHG+PA LA RAV S+
Sbjct: 331 LPIFFSMFLTIYLIAYFIVFRNWKPQIRPEASSCLISIFHGSPAVFLATRAVFSSSERS- 389
Query: 73 VGVAGDLAAPNTRADELALDFSTAYFAVDLAHYLVLLPGERLFVAHHLATLYVXXXXXXX 132
A+ NT A LDFS AYF DL HY+V P + LF+ HH+ATL+V
Sbjct: 390 ------FASANTAAQNTVLDFSVAYFLTDLFHYIVFNPNDVLFIGHHVATLFVFLTCRFL 443
Query: 133 XXXXXXXXXVMEVLAEATSLAQNLWTLXXXXXXXXXXXXXXXXXXXXX--FYAAYTAMRA 190
+ +LAE TS QN WTL FYA Y+ +R
Sbjct: 444 VFHGACAILGLLILAEVTSACQNAWTLAGARKNDPESRLAVKVYDLLSPPFYAFYSIVRG 503
Query: 191 VLGPAWFVRMVRFYYASDXXXXXXXEALPAWARASWTVVIGAGIXXXXXXXXXXXXEFFR 250
VLGP +F +MV FY +P W SW +V+G I E F
Sbjct: 504 VLGPLFFGKMVAFYARGGAHG-----VIPNWLWISWAIVVGIAITVSILWIWNLWIELFS 558
Query: 251 ENK 253
E K
Sbjct: 559 ERK 561
>AT3G27270.1 | chr3:10073315-10074064 FORWARD LENGTH=250
Length = 249
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 115/249 (46%), Gaps = 19/249 (7%)
Query: 16 FLAMFAAIYLVGYLVVFRRWGGAQRAEASSCFASLFHGTPAAALALRAVLSNP-RGCCVG 74
F ++F +YL+GYL +F++W R ASSC SL HG A LA A+LS+P RG
Sbjct: 13 FFSIFIFVYLLGYLFIFKKWTPETRPLASSCLISLLHGVSAVVLATNALLSDPNRG---- 68
Query: 75 VAGDLAAPNTRADELALDFSTAYFAVDLAHYLVLLP----GERLFVAHHLATLYVXXXXX 130
++ NT++ LDFS+AYF DL H L + P G+ LF AHHLA L+V
Sbjct: 69 ----FSSVNTQSQNSILDFSSAYFLADLVH-LAVFPSPAGGDSLFAAHHLAVLFVFLTCR 123
Query: 131 XXXXXXXXXXXVMEVLAEATSLAQNLWTLXXXXXXXXXXXXXXXXXXXXXFYAAYTAMRA 190
+ V+AEATS QN WTL FYA+Y+ R
Sbjct: 124 YMVAHGACALLALLVVAEATSACQNTWTLADARGKDAPLAVSLHRFVTVPFYASYSVCRC 183
Query: 191 VLGPAWFVRMVRFYYASDXXXXXXXEALPAWARASWTVVIGAGIXXXXXXXXXXXXEFFR 250
VL P V+M FY + + +P W SWTVVI + FF+
Sbjct: 184 VLAPLLIVKMTWFYVSGG-----ADDVIPRWVWVSWTVVIVTAVTVSILWIWNLWVLFFQ 238
Query: 251 ENKRKESSK 259
E K + K
Sbjct: 239 ERYSKFTKK 247
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,599,198
Number of extensions: 102032
Number of successful extensions: 223
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 3
Length of query: 261
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 164
Effective length of database: 8,447,217
Effective search space: 1385343588
Effective search space used: 1385343588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 110 (47.0 bits)