Os05g0302600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAM, LAG1 and CLN8 homology domain containing protein.
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Os05g0302600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAM, LAG1 and CLN8 homology domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.29 | 0.267 | 11.1 | 0.774 | 0.773 | 0.0386 | -0.624 | 2.05 | -0.088 | 8.69 | 20.73 | 1945 | -- | -- |
| 35.96 | 0.279 | 11.2 | 0.788 | 0.767 | -0.578 | -0.807 | -- | -0.0805 | 8.54 | 13.8 | 47520 | -- | -- |
| 33.38 | 0.269 | 11.1 | 0.784 | 0.772 | 0.0515 | -- | 2.12 | -0.0819 | 8.66 | 20.8 | 2079 | -- | -- |
| 37.65 | 0.286 | 11.2 | 0.773 | 0.765 | -0.631 | -- | -- | -0.082 | 8.7 | 14.1 | 47520 | -- | -- |
| 66.71 | 0.38 | 11.1 | 0.876 | -- | -0.0388 | -- | 2.06 | -0.0305 | -- | 21.3 | 2529 | -- | -- |
| 41.37 | 0.302 | 11.2 | 0.262 | 0.765 | -- | -0.763 | -- | -0.232 | 8.72 | -- | -- | -- | -- |
| 43.29 | 0.308 | 11.2 | 0.237 | 0.767 | -- | -- | -- | -0.232 | 8.72 | -- | -- | -- | -- |
| 70.61 | 0.391 | 11.2 | 0.791 | -- | -0.651 | -- | -- | -0.0703 | -- | 14.11 | 47520 | -- | -- |
| 44.09 | 0.309 | 11.2 | -- | 0.769 | -0.151 | -- | -- | -0.24 | 8.68 | 11.6 | 47520 | -- | -- |
| 76.61 | 0.409 | 11.2 | 0.238 | -- | -- | -- | -- | -0.226 | -- | -- | -- | -- | -- |
| 44.77 | 0.313 | 11.2 | -- | 0.768 | -- | -- | -- | -0.259 | 8.7 | -- | -- | -- | -- |
| 76.95 | 0.409 | 11.2 | -- | -- | -0.192 | -- | -- | -0.234 | -- | 8.415 | 47520 | -- | -- |
| 78.11 | 0.413 | 11.2 | -- | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.18 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 2 | 30.30 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 3 | 30.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 7 | 30.75 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 21 | 31.21 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 33 | 31.43 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 36 | 31.45 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 74 | 31.61 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 17 | NA |
| 96 | 31.68 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 8 |
| 130 | 31.79 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 9 | 15 |
| 137 | 31.80 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 13 |
| 185 | 31.91 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 17 | NA |
| 243 | 32.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 277 | 32.06 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 282 | 32.07 | temperature | 20 | 1440 | > th | dose independent | sin | 14 | NA |
| 306 | 32.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 315 | 32.11 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 337 | 32.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 354 | 32.15 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 419 | 32.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 420 | 32.21 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 444 | 32.23 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 471 | 32.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 15 |
| 479 | 32.26 | temperature | 20 | 1440 | < th | dose independent | sin | 14 | NA |
| 502 | 32.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 510 | 32.28 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 594 | 32.33 | atmosphere | 1005 | 14400 | < th | dose independent | no | NA | NA |
| 597 | 32.33 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 605 | 32.33 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 9 |
| 630 | 32.35 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 15 | 23 |
| 646 | 32.36 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 672 | 32.37 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 695 | 32.39 | atmosphere | 1005 | 14400 | > th | dose independent | no | NA | NA |
| 753 | 32.41 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 783 | 32.43 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 837 | 32.47 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 10 |
| 965 | 32.53 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 6 |