BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0302600 Os05g0302600|AK061205
         (256 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14280.1  | chr5:4609123-4611444 FORWARD LENGTH=573            205   2e-53
AT3G25950.1  | chr3:9496356-9497111 FORWARD LENGTH=252            190   5e-49
AT3G27270.1  | chr3:10073315-10074064 FORWARD LENGTH=250          166   9e-42

>AT5G14280.1 | chr5:4609123-4611444 FORWARD LENGTH=573
          Length = 572

 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 112/237 (47%), Positives = 135/237 (56%), Gaps = 4/237 (1%)

Query: 19  PGFLAMYAAIYCVGQXXXXXXXXXXXXXDGASCLISLAHGTXXXXXXXXXXXXXXXXXRG 78
           P F +M+  IY +               + +SCLIS+ HG+                 R 
Sbjct: 332 PIFFSMFLTIYLIAYFIVFRNWKPQIRPEASSCLISIFHGSPAVFLATRAVFSSSE--RS 389

Query: 79  FAAPNTRLQDHVLDYSVAYFTMDLLHYLAFLPGDTLFIAHHVATLFVFVTCRYLVRHGXX 138
           FA+ NT  Q+ VLD+SVAYF  DL HY+ F P D LFI HHVATLFVF+TCR+LV HG  
Sbjct: 390 FASANTAAQNTVLDFSVAYFLTDLFHYIVFNPNDVLFIGHHVATLFVFLTCRFLVFHGAC 449

Query: 139 XXXXXXXXXXXXXXXQNVWTLAGIWRAEKPA--AARVYRALSPPFYFIYTVVRGVAGPLF 196
                          QN WTLAG  + +  +  A +VY  LSPPFY  Y++VRGV GPLF
Sbjct: 450 AILGLLILAEVTSACQNAWTLAGARKNDPESRLAVKVYDLLSPPFYAFYSIVRGVLGPLF 509

Query: 197 FLKMSLFYLSGQAVDVIPWWVRISWIVVVGTAITVSNLWIWNLWKELFRERKQSMTK 253
           F KM  FY  G A  VIP W+ ISW +VVG AITVS LWIWNLW ELF ERK +  +
Sbjct: 510 FGKMVAFYARGGAHGVIPNWLWISWAIVVGIAITVSILWIWNLWIELFSERKANKIR 566



>AT3G25950.1 | chr3:9496356-9497111 FORWARD LENGTH=252
          Length = 251

 Score =  190 bits (483), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 104/238 (43%), Positives = 133/238 (55%), Gaps = 2/238 (0%)

Query: 18  YPGFLAMYAAIYCVGQXXXXXXXXXXXXXDGASCLISLAHGTXXXXXXXXXXXXX-XXXX 76
           +P FL ++ A+Y +G               GASCL+SL HGT                  
Sbjct: 15  FPSFLLLFLAVYTIGYFLVFRTWKQSSHL-GASCLMSLFHGTPAVIMASHALLTTPRADV 73

Query: 77  RGFAAPNTRLQDHVLDYSVAYFTMDLLHYLAFLPGDTLFIAHHVATLFVFVTCRYLVRHG 136
             FA+PNT ++ +VLD+S+AYFT+DLLHYL FLP D +FI HH+ATL+VF TCR+ V HG
Sbjct: 74  HSFASPNTAVESNVLDFSMAYFTVDLLHYLIFLPNDFIFILHHIATLYVFATCRFAVGHG 133

Query: 137 XXXXXXXXXXXXXXXXXQNVWTLAGIWRAEKPAAARVYRALSPPFYFIYTVVRGVAGPLF 196
                            QNVWT+ G  + +   A RV   LSPPFY  YTVVRG+AGP+ 
Sbjct: 134 AHGLLLLLILAEATSACQNVWTITGYRKNDVALARRVRELLSPPFYLFYTVVRGLAGPVV 193

Query: 197 FLKMSLFYLSGQAVDVIPWWVRISWIVVVGTAITVSNLWIWNLWKELFRERKQSMTKK 254
              M+ FY SG A  V+P W  +SW+VV+G AI VS LW+   W + FRE   S   K
Sbjct: 194 LYDMATFYGSGAADGVVPRWAWLSWLVVIGFAILVSILWVLRNWLDWFRENNSSKKYK 251



>AT3G27270.1 | chr3:10073315-10074064 FORWARD LENGTH=250
          Length = 249

 Score =  166 bits (421), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 102/240 (42%), Positives = 132/240 (55%), Gaps = 7/240 (2%)

Query: 19  PGFLAMYAAIYCVGQXXXXXXXXXXXXXDGASCLISLAHGTXXXXXXXXXXXXXXXXXRG 78
           P F +++  +Y +G                +SCLISL HG                  RG
Sbjct: 11  PLFFSIFIFVYLLGYLFIFKKWTPETRPLASSCLISLLHGVSAVVLATNALLSDPN--RG 68

Query: 79  FAAPNTRLQDHVLDYSVAYFTMDLLHYLAFLP----GDTLFIAHHVATLFVFVTCRYLVR 134
           F++ NT+ Q+ +LD+S AYF  DL+H LA  P    GD+LF AHH+A LFVF+TCRY+V 
Sbjct: 69  FSSVNTQSQNSILDFSSAYFLADLVH-LAVFPSPAGGDSLFAAHHLAVLFVFLTCRYMVA 127

Query: 135 HGXXXXXXXXXXXXXXXXXQNVWTLAGIWRAEKPAAARVYRALSPPFYFIYTVVRGVAGP 194
           HG                 QN WTLA     + P A  ++R ++ PFY  Y+V R V  P
Sbjct: 128 HGACALLALLVVAEATSACQNTWTLADARGKDAPLAVSLHRFVTVPFYASYSVCRCVLAP 187

Query: 195 LFFLKMSLFYLSGQAVDVIPWWVRISWIVVVGTAITVSNLWIWNLWKELFRERKQSMTKK 254
           L  +KM+ FY+SG A DVIP WV +SW VV+ TA+TVS LWIWNLW   F+ER    TKK
Sbjct: 188 LLIVKMTWFYVSGGADDVIPRWVWVSWTVVIVTAVTVSILWIWNLWVLFFQERYSKFTKK 247



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.329    0.140    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,482,348
Number of extensions: 139477
Number of successful extensions: 338
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 3
Length of query: 256
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 160
Effective length of database: 8,474,633
Effective search space: 1355941280
Effective search space used: 1355941280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 110 (47.0 bits)