BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0233300 Os12g0233300|AK058317
(225 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0233300 Histidine triad (HIT) protein family protein 447 e-126
Os11g0295000 Similar to HIT family protein 82 2e-16
>Os12g0233300 Histidine triad (HIT) protein family protein
Length = 225
Score = 447 bits (1150), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/225 (97%), Positives = 219/225 (97%)
Query: 1 MSPPVSSGAPVQERRLGVLLSHLRPCAPPAARRGNXXXXXXDLRVREAEGTGGLAASPCA 60
MSPPVSSGAPVQERRLGVLLSHLRPCAPPAARRGN DLRVREAEGTGGLAASPCA
Sbjct: 1 MSPPVSSGAPVQERRLGVLLSHLRPCAPPAARRGNHHHHHHDLRVREAEGTGGLAASPCA 60
Query: 61 ADGSGETSGGQRCVFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSLQ 120
ADGSGETSGGQRCVFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSLQ
Sbjct: 61 ADGSGETSGGQRCVFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSLQ 120
Query: 121 ATPPSVIAAICCKLPLISSAIVKATQCDAFNVLVNNGKVAGQVIFHTHVHLIPRRKGDNL 180
ATPPSVIAAICCKLPLISSAIVKATQCDAFNVLVNNGKVAGQVIFHTHVHLIPRRKGDNL
Sbjct: 121 ATPPSVIAAICCKLPLISSAIVKATQCDAFNVLVNNGKVAGQVIFHTHVHLIPRRKGDNL 180
Query: 181 WSSETYERNSIKHNQETKDLVSGIKELLFPPQDDSAEGSTIPKEL 225
WSSETYERNSIKHNQETKDLVSGIKELLFPPQDDSAEGSTIPKEL
Sbjct: 181 WSSETYERNSIKHNQETKDLVSGIKELLFPPQDDSAEGSTIPKEL 225
>Os11g0295000 Similar to HIT family protein
Length = 104
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 57/82 (69%), Gaps = 3/82 (3%)
Query: 145 TQCDAFNVLVNNGKVAGQVIFHTHVHLIPRRKGDNLWSSETYERNSIKHNQETKDLVSGI 204
T +FN++VNNG AGQVIFHTH H+IPRR GD LW +E+ R SI+ N ET LVS I
Sbjct: 23 TTTYSFNMVVNNGAAAGQVIFHTHFHIIPRRSGDKLWPTESLRRRSIEPN-ETPGLVSCI 81
Query: 205 KELLF-PPQDDSAE-GSTIPKE 224
KE L+ P+ AE S++PKE
Sbjct: 82 KEQLYSSPEGCKAEPPSSLPKE 103
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,119,966
Number of extensions: 410799
Number of successful extensions: 1189
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1189
Number of HSP's successfully gapped: 2
Length of query: 225
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 128
Effective length of database: 11,971,043
Effective search space: 1532293504
Effective search space used: 1532293504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)