Os12g0233300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histidine triad (HIT) protein family protein.
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Os12g0233300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Histidine triad (HIT) protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.49 | 0.432 | 11.5 | -0.476 | 1.91 | 0.68 | -0.197 | -0.823 | 0.16 | 22.7 | 74.04 | 247 | -- | -- |
| 86.8 | 0.434 | 11.5 | -0.513 | 1.92 | 0.68 | -0.314 | -- | 0.154 | 22.7 | 74 | 250 | -- | -- |
| 84.6 | 0.428 | 11.5 | -0.457 | 1.9 | 0.676 | -- | -0.864 | 0.162 | 22.7 | 74.09 | 239 | -- | -- |
| 87.47 | 0.436 | 11.5 | -0.518 | 1.92 | 0.679 | -- | -- | 0.152 | 22.7 | 74.23 | 247 | -- | -- |
| 233.48 | 0.716 | 11.4 | -0.347 | -- | 1.17 | -- | -0.77 | 0.159 | -- | 76 | 41 | -- | -- |
| 100.67 | 0.47 | 11.5 | -0.597 | 2.11 | -- | -0.529 | -- | 0.106 | 23.8 | -- | -- | -- | -- |
| 101.88 | 0.473 | 11.5 | -0.575 | 2.11 | -- | -- | -- | 0.109 | 23.8 | -- | -- | -- | -- |
| 231.45 | 0.712 | 11.5 | -0.408 | -- | 1.17 | -- | -- | 0.105 | -- | 77 | 30 | -- | -- |
| 94.43 | 0.453 | 11.5 | -- | 1.96 | 0.752 | -- | -- | 0.213 | 22.6 | 74.58 | 285 | -- | -- |
| 383.12 | 0.915 | 11.4 | -0.513 | -- | -- | -- | -- | 0.135 | -- | -- | -- | -- | -- |
| 110.61 | 0.492 | 11.5 | -- | 2.11 | -- | -- | -- | 0.173 | 23.8 | -- | -- | -- | -- |
| 235.83 | 0.718 | 11.4 | -- | -- | 1.18 | -- | -- | 0.15 | -- | 77 | 30 | -- | -- |
| 390.07 | 0.922 | 11.4 | -- | -- | -- | -- | -- | 0.192 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.03 | humidity | 60 | 30 | > th | dose dependent | rect. | 8 | 20 |
| 12 | 81.02 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 16 | 81.25 | humidity | 70 | 90 | > th | dose dependent | rect. | 8 | 11 |
| 19 | 81.33 | humidity | 70 | 30 | > th | dose dependent | rect. | 8 | 8 |
| 24 | 81.41 | humidity | 90 | 90 | < th | dose dependent | rect. | 11 | 12 |
| 32 | 81.55 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 37 | 81.62 | humidity | 90 | 90 | < th | dose dependent | sin | 20 | NA |
| 61 | 82.08 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 62 | 82.10 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 78 | 82.28 | humidity | 60 | 14400 | < th | dose independent | sin | 12 | NA |
| 88 | 82.37 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 99 | 82.49 | humidity | 90 | 90 | < th | dose dependent | rect. | 11 | 8 |
| 101 | 82.53 | humidity | 60 | 14400 | < th | dose dependent | sin | 11 | NA |
| 107 | 82.59 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 17 |
| 114 | 82.66 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 18 |
| 122 | 82.76 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 131 | 82.84 | humidity | 60 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 134 | 82.85 | humidity | 70 | 90 | > th | dose independent | rect. | 7 | 21 |
| 152 | 82.90 | humidity | 60 | 14400 | > th | dose independent | sin | 12 | NA |
| 177 | 83.04 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 183 | 83.06 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 12 |
| 184 | 83.07 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 9 |
| 200 | 83.12 | humidity | 90 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 233 | 83.37 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 248 | 83.44 | humidity | 60 | 30 | > th | dose dependent | sin | 19 | NA |
| 267 | 83.51 | humidity | 80 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 377 | 83.93 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 383 | 83.95 | humidity | 60 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 389 | 83.97 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 435 | 84.12 | humidity | 80 | 270 | < th | dose independent | rect. | 9 | 9 |
| 450 | 84.16 | humidity | 60 | 14400 | < th | dose dependent | rect. | 15 | 5 |
| 471 | 84.19 | humidity | 80 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 488 | 84.22 | wind | 3 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 495 | 84.23 | humidity | 80 | 270 | > th | dose independent | rect. | 7 | 9 |
| 558 | 84.41 | humidity | 80 | 90 | > th | dose independent | rect. | 7 | 12 |
| 678 | 84.66 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 681 | 84.67 | humidity | 80 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 698 | 84.68 | humidity | 70 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 744 | 84.78 | wind | 3 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 804 | 84.91 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 4 |
| 812 | 84.93 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 828 | 84.94 | humidity | 90 | 90 | < th | dose dependent | rect. | 6 | 15 |
| 849 | 84.99 | radiation | 1 | 90 | < th | dose independent | rect. | 5 | 23 |
| 911 | 85.06 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 931 | 85.09 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 960 | 85.13 | humidity | 80 | 270 | < th | dose independent | sin | 23 | NA |