BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0233300 Os12g0233300|AK058317
(225 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48545.1 | chr5:19676228-19677945 FORWARD LENGTH=198 197 5e-51
AT1G31160.1 | chr1:11122880-11124106 REVERSE LENGTH=188 50 1e-06
AT5G58240.1 | chr5:23558349-23559313 REVERSE LENGTH=181 47 1e-05
>AT5G48545.1 | chr5:19676228-19677945 FORWARD LENGTH=198
Length = 197
Score = 197 bits (500), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 136/199 (68%), Gaps = 15/199 (7%)
Query: 11 VQERRLGVLLSHLRPCAPPAARRGNXXXXXXDLRVREAEGTGGLAASPCAADGSGETSGG 70
++ RRL +L SHL P P R LRV + + DG E+S
Sbjct: 1 MEARRLAILCSHLNPPGPNPTRDPT-------LRVSDCSSGS-------SGDGKVESSTL 46
Query: 71 QR-CVFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSLQATPPSVIAA 129
Q CVFC+I++G P KLYEDD+CLCILDT PLS GHSLIIPK H+P+L+ TPPSV+AA
Sbjct: 47 QNDCVFCKIIRGESPCLKLYEDDMCLCILDTNPLSHGHSLIIPKLHYPTLEETPPSVVAA 106
Query: 130 ICCKLPLISSAIVKATQCDAFNVLVNNGKVAGQVIFHTHVHLIPRRKGDNLWSSETYERN 189
+C K+PLIS+AIVKAT D+FN+LVNNG AGQVIFHTH+H+IPR++ D LW+SE+ R+
Sbjct: 107 MCSKVPLISNAIVKATGSDSFNLLVNNGAAAGQVIFHTHIHIIPRKERDCLWASESLRRH 166
Query: 190 SIKHNQETKDLVSGIKELL 208
S+K ++E LVS ++ L
Sbjct: 167 SLKLDKEASQLVSCVRRHL 185
>AT1G31160.1 | chr1:11122880-11124106 REVERSE LENGTH=188
Length = 187
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 70 GQRCVFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRH--FPSLQATPPSVI 127
G +F +I+ P+ +YED+ L D P + H L+IPK SL P +
Sbjct: 73 GAPTIFDKIIAKEIPSDIVYEDENVLAFRDINPQAPVHVLVIPKLRDGLTSLGKAEPRHV 132
Query: 128 AAICCKLPLISSAIVKATQCDAFNVLVNNGKVAGQVIFHTHVHLIPRRK 176
+ L K D F V++NNG A Q ++H H+H++ R+
Sbjct: 133 EVLGQLLHASKIVAEKEGILDGFRVVINNGVEACQSVYHLHLHVLGGRQ 181
>AT5G58240.1 | chr5:23558349-23559313 REVERSE LENGTH=181
Length = 180
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 45/104 (43%)
Query: 84 PAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSLQATPPSVIAAICCKLPLISSAIVK 143
P Y + +++ +PL H L+ P+R P + + + S +
Sbjct: 37 PREVFYATPLSYAMVNLRPLLPAHVLVCPRRLVPRFTDLTADETSDLWLTAQKVGSKLET 96
Query: 144 ATQCDAFNVLVNNGKVAGQVIFHTHVHLIPRRKGDNLWSSETYE 187
+ + + +G AGQ + H H+H++PR+ GD + E Y+
Sbjct: 97 FHNASSLTLAIQDGPQAGQTVPHVHIHILPRKGGDFEKNDEIYD 140
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,388,056
Number of extensions: 230492
Number of successful extensions: 437
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 3
Length of query: 225
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 130
Effective length of database: 8,502,049
Effective search space: 1105266370
Effective search space used: 1105266370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)