Os11g0295000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HIT family protein.
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Os11g0295000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HIT family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.74 | 0.224 | 11.7 | -0.638 | 0.822 | -0.471 | -0.449 | -0.47 | -0.00372 | 2.67 | 24.2 | 29 | -- | -- |
| 23.03 | 0.224 | 11.7 | -0.701 | 0.815 | -0.422 | -0.6 | -- | -0.0191 | 2.66 | 24.2 | 19 | -- | -- |
| 23.32 | 0.227 | 11.7 | -0.586 | 0.825 | -0.491 | -- | -0.763 | 0.00759 | 2.64 | 24.2 | 29 | -- | -- |
| 24.31 | 0.23 | 11.7 | -0.689 | 0.816 | -0.42 | -- | -- | -0.0155 | 2.68 | 24.4 | 21 | -- | -- |
| 52.15 | 0.336 | 11.8 | -0.895 | -- | -0.751 | -- | 0.264 | -0.108 | -- | 29.09 | 1070 | -- | -- |
| 25.58 | 0.237 | 11.7 | -0.605 | 0.751 | -- | -0.604 | -- | 0.0542 | 2.81 | -- | -- | -- | -- |
| 26.83 | 0.243 | 11.7 | -0.591 | 0.749 | -- | -- | -- | 0.0577 | 2.82 | -- | -- | -- | -- |
| 52.29 | 0.337 | 11.8 | -0.808 | -- | -0.758 | -- | -- | -0.112 | -- | 28.7 | 1086 | -- | -- |
| 35.65 | 0.28 | 11.7 | -- | 0.762 | -0.154 | -- | -- | 0.101 | 2.75 | 24.4 | 21 | -- | -- |
| 59.32 | 0.36 | 11.7 | -0.559 | -- | -- | -- | -- | 0.0769 | -- | -- | -- | -- | -- |
| 36.03 | 0.281 | 11.7 | -- | 0.738 | -- | -- | -- | 0.124 | 2.81 | -- | -- | -- | -- |
| 58.54 | 0.356 | 11.7 | -- | -- | 0.77 | -- | -- | 0.227 | -- | 35.11 | 13 | -- | -- |
| 67.56 | 0.384 | 11.7 | -- | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.13 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 3 |
| 3 | 22.18 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 1 |
| 4 | 22.19 | temperature | 25 | 10 | < th | dose dependent | sin | 14 | NA |
| 14 | 22.36 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 15 |
| 16 | 22.37 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 15 |
| 33 | 22.44 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 19 |
| 41 | 22.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 43 | 22.47 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 10 |
| 47 | 22.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 62 | 22.51 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 3 |
| 64 | 22.51 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 6 |
| 66 | 22.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 68 | 22.51 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 11 |
| 74 | 22.52 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 5 |
| 87 | 22.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 203 | 22.64 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 7 |
| 215 | 22.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 246 | 22.67 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 13 |
| 297 | 22.71 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 321 | 22.74 | temperature | 10 | 10 | > th | dose dependent | sin | 12 | NA |
| 380 | 22.77 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 396 | 22.78 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 12 |
| 452 | 22.81 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 14 |
| 533 | 22.85 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 534 | 22.85 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 544 | 22.86 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 551 | 22.86 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 552 | 22.86 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 565 | 22.87 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 566 | 22.88 | temperature | 25 | 720 | < th | dose independent | sin | 18 | NA |
| 591 | 22.88 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 628 | 22.90 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 638 | 22.91 | humidity | 90 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 688 | 22.93 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 709 | 22.93 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 710 | 22.94 | temperature | 25 | 720 | > th | dose independent | sin | 19 | NA |
| 744 | 22.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 831 | 22.98 | temperature | 10 | 720 | > th | dose dependent | sin | 17 | NA |
| 862 | 22.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 904 | 23.00 | temperature | 15 | 90 | > th | dose dependent | rect. | 16 | 14 |
| 917 | 23.01 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 7 |
| 982 | 23.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |