BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0190200 Os12g0190200|AK060135
(273 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0190200 Similar to Thylakoid lumenal 29.8 kDa protein,... 462 e-130
Os01g0805300 Photosystem II oxygen evolving complex protein... 86 2e-17
>Os12g0190200 Similar to Thylakoid lumenal 29.8 kDa protein, chloroplast
precursor
Length = 273
Score = 462 bits (1189), Expect = e-130, Method: Compositional matrix adjust.
Identities = 231/273 (84%), Positives = 231/273 (84%)
Query: 1 MLLAEMMNXXXXXXXXXXXXXTKQLVPATKGRXXXXXXVRCSSGPNLSEAHEEEDGVASL 60
MLLAEMMN TKQLVPATKGR VRCSSGPNLSEAHEEEDGVASL
Sbjct: 1 MLLAEMMNSSVLFLPSSSLFLTKQLVPATKGRASAAAAVRCSSGPNLSEAHEEEDGVASL 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXESMAVKQGLLAGRIPGLSDPDEKGWRTYRRPDDKSGG 120
ESMAVKQGLLAGRIPGLSDPDEKGWRTYRRPDDKSGG
Sbjct: 61 MGRRHAMASAAAACGVSVFGFAGESMAVKQGLLAGRIPGLSDPDEKGWRTYRRPDDKSGG 120
Query: 121 HGVGWSPIIPYSFKVRDGWEEVPVSIADLGGTEIDLRFANSKQGRLFVVVAPVRRFAELD 180
HGVGWSPIIPYSFKVRDGWEEVPVSIADLGGTEIDLRFANSKQGRLFVVVAPVRRFAELD
Sbjct: 121 HGVGWSPIIPYSFKVRDGWEEVPVSIADLGGTEIDLRFANSKQGRLFVVVAPVRRFAELD 180
Query: 181 DATIEKIGTPEKVIDAFGPEVIGENVEGKVLSMATAEYSGRTYYQFELEPPHIFITATAA 240
DATIEKIGTPEKVIDAFGPEVIGENVEGKVLSMATAEYSGRTYYQFELEPPHIFITATAA
Sbjct: 181 DATIEKIGTPEKVIDAFGPEVIGENVEGKVLSMATAEYSGRTYYQFELEPPHIFITATAA 240
Query: 241 GNRLYLFNVTANGLQWKRNYNDLKQIAESFRVV 273
GNRLYLFNVTANGLQWKRNYNDLKQIAESFRVV
Sbjct: 241 GNRLYLFNVTANGLQWKRNYNDLKQIAESFRVV 273
>Os01g0805300 Photosystem II oxygen evolving complex protein PsbP family protein
Length = 272
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 15/160 (9%)
Query: 128 IIPYSFKVRDGWEEVPVSIADLGGTE--------IDLRFANSKQGRLFVVVAPVRRFAEL 179
+ PY F + W++ V+ G ++++F + KQG++ VV +P+ R
Sbjct: 113 VQPYEFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKVQVVASPLIRLTNR 172
Query: 180 DDATIEKIGTPEKVIDAFGPEVIGENVEG-KVLSMATAEYSGRTYYQFELEPP------H 232
+ATIE IG+PE++I + GP V G + +++ + + G+TYY + LE P H
Sbjct: 173 PNATIEDIGSPERLIASLGPFVTGNTFDSDELVDTSVEKIDGQTYYSYVLETPLALTGSH 232
Query: 233 IFITATAAGNRLYLFNVTANGLQWKRNYNDLKQIAESFRV 272
ATA GN + LF +A+ QW+ + LK I +SF+V
Sbjct: 233 NLAKATAKGNTVVLFVASASDKQWQSSEKVLKTIVDSFKV 272
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,426,464
Number of extensions: 340618
Number of successful extensions: 624
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 621
Number of HSP's successfully gapped: 2
Length of query: 273
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 174
Effective length of database: 11,866,615
Effective search space: 2064791010
Effective search space used: 2064791010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)