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Os12g0190200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Thylakoid lumenal 29.8 kDa protein, chloroplast precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.8 (0.0233) R2 : 0.865
β1 : -1.36 (0.0854) R2dD : 0.0781 R2D : 0.0604
β2 : 3.11 (0.0601) R2dC : 0.797 R2C : 0.779
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.371 (0.0498) R2dN8 : 0.022 R2N8 : -0.00598
σ : 0.438
deviance : 87.68
__
_____
C
peak time of C : 7.41
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.93 0.393 12.8 -1.34 3.4 -0.964 1.52 0.397 -0.508 7.26 91.52 333 -- --
69.66 0.389 12.8 -1.35 3.38 -1.12 1.62 -- -0.494 7.28 92.74 340 -- --
74.04 0.401 12.8 -1.32 3.35 -1.02 -- 1.5 -0.48 7.28 92.81 332 -- --
76.7 0.408 12.8 -1.32 3.35 -1.18 -- -- -0.475 7.3 93.62 317 -- --
340.21 0.859 12.8 -1.66 -- 2.45 -- 0.285 -0.378 -- 65.23 563 -- --
82.68 0.426 12.8 -1.39 3.1 -- 1.35 -- -0.368 7.43 -- -- -- --
87.68 0.438 12.8 -1.36 3.11 -- -- -- -0.371 7.41 -- -- -- --
327.95 0.843 12.8 -1.33 -- 2.94 -- -- -0.151 -- 64.72 560 -- --
120.37 0.511 12.7 -- 3.46 -0.984 -- -- -0.387 7.26 89.49 372 -- --
602.18 1.15 12.8 -1.31 -- -- -- -- -0.321 -- -- -- -- --
136.56 0.547 12.7 -- 3.09 -- -- -- -0.219 7.44 -- -- -- --
374.12 0.901 12.8 -- -- 3 -- -- -0.0269 -- 63.14 569 -- --
647.58 1.19 12.8 -- -- -- -- -- -0.175 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 59.48 temperature 10.0 270 > th dose dependent rect. 19 17
2 59.62 temperature 30.0 270 < th dose dependent rect. 23 9
54 63.43 temperature 20.0 270 > th dose independent rect. 14 3
58 63.52 precipitation 0.1 270 < th dose independent rect. 17 21
59 63.52 precipitation 0.1 270 < th dose dependent rect. 17 21
67 63.78 atmosphere 995.0 270 > th dose independent rect. 13 19
71 63.97 atmosphere 995.0 270 > th dose independent rect. 14 3
79 64.31 atmosphere 995.0 270 > th dose independent rect. 14 17
83 64.38 atmosphere 995.0 270 > th dose dependent rect. 14 3
86 64.45 atmosphere 995.0 90 > th dose dependent rect. 14 5
87 64.45 atmosphere 995.0 10 > th dose dependent rect. 14 6
101 64.77 atmosphere 995.0 270 > th dose independent rect. 12 21
104 64.79 temperature 20.0 270 > th dose independent rect. 13 6
105 64.79 atmosphere 1000.0 10 > th dose independent rect. 14 6
107 64.81 atmosphere 995.0 270 > th dose independent rect. 13 6
111 64.83 wind 9.0 270 < th dose independent rect. 17 21
113 64.88 radiation 1.0 270 > th dose independent rect. 8 5
120 64.96 radiation 1.0 270 > th dose independent rect. 7 7
123 65.00 wind 9.0 270 < th dose independent rect. 14 3
124 65.00 temperature 15.0 270 > th dose independent rect. 8 5
128 65.04 wind 9.0 270 < th dose independent rect. 8 5
131 65.08 wind 1.0 270 > th dose independent rect. 14 3
133 65.09 temperature 10.0 270 > th dose independent rect. 14 3
135 65.09 atmosphere 1010.0 270 < th dose independent rect. 14 3
137 65.09 temperature 10.0 270 > th dose independent rect. 17 21
142 65.16 precipitation 0.1 270 < th dose independent rect. 8 5
143 65.16 precipitation 0.1 270 < th dose dependent rect. 8 5
145 65.18 atmosphere 995.0 270 > th dose independent rect. 8 5
146 65.18 atmosphere 1015.0 270 < th dose independent rect. 8 5
147 65.18 temperature 10.0 270 > th dose independent rect. 13 19
150 65.25 wind 9.0 270 < th dose independent rect. 13 19
156 65.33 precipitation 0.1 270 < th dose independent rect. 14 3
157 65.33 precipitation 0.1 270 < th dose dependent rect. 14 3
163 65.37 radiation 40.0 270 < th dose independent rect. 14 3
178 65.52 precipitation 0.1 270 < th dose independent rect. 19 18
179 65.52 precipitation 0.1 270 < th dose dependent rect. 19 18
186 65.58 humidity 50.0 270 > th dose independent rect. 8 5
187 65.58 temperature 10.0 270 > th dose dependent rect. 19 8
188 65.61 wind 9.0 270 < th dose independent rect. 7 7
189 65.62 precipitation 0.1 270 < th dose independent rect. 7 7
190 65.62 atmosphere 995.0 10 > th dose independent rect. 14 20
191 65.62 precipitation 0.1 270 < th dose dependent rect. 7 7
197 65.66 temperature 15.0 270 > th dose independent rect. 7 7
200 65.72 radiation 1.0 270 > th dose independent rect. 14 3
208 65.75 atmosphere 995.0 270 > th dose independent rect. 7 7
209 65.75 atmosphere 1015.0 270 < th dose independent rect. 7 7
210 65.75 temperature 10.0 270 > th dose independent rect. 14 17
212 65.78 wind 9.0 270 < th dose independent rect. 14 17
215 65.79 temperature 15.0 270 > th dose independent rect. 9 3
216 65.79 radiation 1.0 270 > th dose independent rect. 9 3
223 65.81 wind 9.0 270 < th dose independent rect. 9 3
226 65.82 humidity 90.0 270 < th dose independent rect. 9 3
228 65.82 wind 9.0 10 < th dose independent rect. 20 18
231 65.89 radiation 40.0 10 < th dose independent rect. 14 6
232 65.89 atmosphere 995.0 270 > th dose independent rect. 3 14
241 65.92 temperature 10.0 270 > th dose dependent rect. 14 3
248 65.95 precipitation 0.1 10 < th dose independent rect. 20 18
249 65.95 precipitation 0.1 10 < th dose dependent rect. 20 18
250 65.96 humidity 90.0 270 < th dose independent rect. 14 3
253 65.97 precipitation 0.1 270 < th dose independent rect. 9 3
254 65.97 wind 9.0 270 < th dose independent rect. 19 18
255 65.97 precipitation 0.1 270 < th dose dependent rect. 9 3
259 65.99 atmosphere 995.0 270 > th dose independent rect. 9 3
260 65.99 atmosphere 1015.0 270 < th dose independent rect. 9 3
261 65.99 temperature 10.0 270 > th dose independent rect. 12 21
263 66.01 precipitation 0.1 270 < th dose independent rect. 17 10
264 66.01 precipitation 0.1 270 < th dose dependent rect. 17 10
266 66.03 wind 1.0 270 > th dose independent rect. 8 5
267 66.03 temperature 25.0 270 < th dose independent rect. 23 9
280 66.10 temperature 10.0 10 > th dose dependent rect. 10 4
282 66.11 wind 9.0 270 < th dose independent rect. 12 21
283 66.12 precipitation 0.1 270 < th dose independent rect. 8 14
284 66.12 precipitation 0.1 270 < th dose dependent rect. 8 14
286 66.14 wind 9.0 10 < th dose independent rect. 14 6
291 66.17 humidity 90.0 90 < th dose independent rect. 9 5
292 66.17 wind 9.0 270 < th dose independent rect. 13 6
293 66.17 temperature 10.0 10 > th dose independent rect. 14 6
295 66.17 atmosphere 1010.0 10 < th dose independent rect. 14 6
298 66.17 temperature 10.0 10 > th dose independent rect. 20 18
299 66.17 atmosphere 995.0 10 > th dose independent rect. 20 18
303 66.19 wind 9.0 10 < th dose independent rect. 10 4
308 66.22 precipitation 0.1 10 < th dose independent rect. 14 6
310 66.22 precipitation 0.1 10 < th dose dependent rect. 14 6
311 66.23 temperature 10.0 270 > th dose independent rect. 13 6
313 66.23 atmosphere 1010.0 270 < th dose independent rect. 13 6
315 66.23 temperature 10.0 270 > th dose independent rect. 19 18
316 66.23 atmosphere 995.0 270 > th dose independent rect. 19 18
319 66.25 wind 9.0 270 < th dose dependent rect. 8 5
320 66.26 temperature 20.0 10 > th dose independent rect. 10 4
327 66.29 wind 1.0 10 > th dose independent rect. 14 6
328 66.30 temperature 25.0 270 > th dose independent rect. 19 17
348 66.35 wind 1.0 270 > th dose independent rect. 13 6
351 66.38 humidity 50.0 270 > th dose independent rect. 9 3
358 66.39 humidity 50.0 270 > th dose independent rect. 17 21
359 66.40 wind 1.0 270 > th dose independent rect. 9 3
365 66.42 temperature 10.0 10 > th dose independent rect. 10 4
367 66.42 atmosphere 995.0 10 > th dose independent rect. 10 4
368 66.42 atmosphere 1015.0 10 < th dose independent rect. 10 4
369 66.42 precipitation 0.1 10 < th dose independent rect. 10 4
370 66.42 temperature 10.0 10 > th dose independent rect. 14 20
371 66.42 precipitation 0.1 10 < th dose dependent rect. 10 4
377 66.43 temperature 10.0 1440 > th dose independent rect. 15 6
381 66.43 temperature 10.0 1440 > th dose independent rect. 21 18
390 66.46 radiation 1.0 10 > th dose independent rect. 10 4
395 66.49 wind 9.0 10 < th dose independent rect. 14 20
403 66.52 wind 7.0 270 < th dose independent rect. 18 9
422 66.53 radiation 40.0 270 < th dose dependent rect. 17 10
436 66.56 temperature 10.0 270 > th dose dependent rect. 9 3
441 66.57 atmosphere 995.0 10 > th dose independent rect. 16 18
442 66.57 wind 1.0 270 > th dose dependent rect. 14 3
454 66.62 temperature 10.0 270 > th dose independent rect. 17 10
455 66.62 radiation 20.0 270 < th dose independent rect. 17 10
458 66.62 temperature 10.0 270 > th dose independent rect. 3 14
459 66.62 atmosphere 1015.0 270 < th dose independent rect. 3 14
461 66.62 atmosphere 995.0 270 > th dose independent rect. 17 21
465 66.63 temperature 10.0 1440 > th dose independent rect. 11 4
471 66.63 temperature 10.0 1440 > th dose independent rect. 15 20
497 66.68 humidity 50.0 270 > th dose independent rect. 19 18
503 66.70 wind 1.0 10 > th dose independent rect. 10 4
510 66.70 humidity 50.0 270 > th dose independent rect. 17 10
517 66.72 radiation 40.0 270 < th dose independent rect. 14 17
547 66.77 humidity 50.0 270 > th dose dependent rect. 22 10
562 66.79 temperature 10.0 90 > th dose dependent rect. 14 6
567 66.80 radiation 10.0 43200 < th dose dependent rect. 20 8
581 66.86 radiation 1.0 10 > th dose independent rect. 10 6
582 66.86 precipitation 0.1 270 < th dose independent rect. 13 6
585 66.86 precipitation 0.1 270 < th dose dependent rect. 13 6
603 66.92 wind 9.0 10 < th dose independent rect. 10 6
614 66.97 radiation 1.0 270 > th dose dependent rect. 14 17
619 66.99 atmosphere 1015.0 270 < th dose independent rect. 19 18
634 67.03 temperature 10.0 270 > th dose independent rect. 22 10
636 67.03 humidity 50.0 270 > th dose independent rect. 22 10
638 67.03 atmosphere 995.0 270 > th dose independent rect. 22 10
639 67.03 temperature 10.0 270 > th dose independent rect. 8 14
648 67.05 atmosphere 1015.0 10 < th dose independent rect. 20 18
652 67.06 wind 9.0 270 < th dose independent rect. 22 10
659 67.07 radiation 40.0 270 < th dose independent rect. 22 10
671 67.09 precipitation 0.1 270 < th dose independent rect. 13 19
672 67.09 wind 9.0 270 < th dose dependent rect. 9 3
673 67.09 precipitation 0.1 270 < th dose dependent rect. 13 19
674 67.10 wind 9.0 270 < th dose independent rect. 8 14
678 67.11 wind 9.0 270 < th dose independent rect. 3 14
684 67.12 temperature 10.0 10 > th dose independent rect. 10 6
686 67.12 atmosphere 1015.0 10 < th dose independent rect. 10 6
687 67.12 precipitation 0.1 10 < th dose independent rect. 10 6
695 67.12 temperature 10.0 10 > th dose independent rect. 16 18
698 67.12 precipitation 0.1 10 < th dose dependent rect. 10 6
713 67.17 wind 9.0 10 < th dose independent rect. 16 18
732 67.21 radiation 20.0 270 > th dose independent rect. 14 17
735 67.22 radiation 20.0 270 > th dose independent rect. 14 2
771 67.26 radiation 1.0 270 > th dose independent rect. 18 20
803 67.34 humidity 90.0 270 < th dose independent rect. 10 1
815 67.36 humidity 90.0 10 < th dose independent rect. 10 6
853 67.42 radiation 1.0 270 > th dose dependent rect. 14 3
890 67.53 atmosphere 995.0 270 > th dose independent rect. 18 9
892 67.53 humidity 90.0 270 < th dose independent rect. 19 18
927 67.60 temperature 10.0 10 > th dose dependent rect. 10 6
937 67.62 precipitation 0.1 270 < th dose independent rect. 14 17
939 67.62 precipitation 0.1 270 < th dose dependent rect. 14 17
946 67.64 wind 1.0 10 > th dose independent rect. 10 6
950 67.66 temperature 30.0 270 < th dose independent rect. 18 9
978 67.69 atmosphere 995.0 10 > th dose independent rect. 10 6
979 67.69 atmosphere 1015.0 270 < th dose independent rect. 8 14
1000 67.72 precipitation 0.1 30 < th dose independent rect. 14 20