BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0190200 Os12g0190200|AK060135
         (273 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G77090.1  | chr1:28960576-28961875 REVERSE LENGTH=261          307   4e-84
AT3G56650.1  | chr3:20984807-20985913 FORWARD LENGTH=263           86   2e-17
AT3G63540.1  | chr3:23459372-23459803 REVERSE LENGTH=144           50   2e-06

>AT1G77090.1 | chr1:28960576-28961875 REVERSE LENGTH=261
          Length = 260

 Score =  307 bits (786), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 147/188 (78%), Positives = 163/188 (86%), Gaps = 2/188 (1%)

Query: 88  VKQGLLAGRIPGLSDPDEKGWRTYRRPDDKSGGHGVGWSPIIPYSFKVRDGWEEVPVSIA 147
           VKQGLLAGR+PGLS+PDE+GWRTYRRPD+KSGGHGVGWSPIIPY+F V   W EVPVSIA
Sbjct: 73  VKQGLLAGRVPGLSEPDEEGWRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWNEVPVSIA 132

Query: 148 DLGGTEIDLRFANSKQGRLFVVVAPVRRFAEL--DDATIEKIGTPEKVIDAFGPEVIGEN 205
           DLGGTEIDLRFA+ K+GRL V+VAPV RFA+   DD  IE IG P KVI+AFGPEVIGEN
Sbjct: 133 DLGGTEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIGQPAKVINAFGPEVIGEN 192

Query: 206 VEGKVLSMATAEYSGRTYYQFELEPPHIFITATAAGNRLYLFNVTANGLQWKRNYNDLKQ 265
           VEGKVLS   AE+ GR YYQFELEPPH+ ITATAAGNRLYLF+VT NGLQWKR+Y DLK+
Sbjct: 193 VEGKVLSSNVAEHDGRLYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKR 252

Query: 266 IAESFRVV 273
           IA SFR+V
Sbjct: 253 IASSFRIV 260



>AT3G56650.1 | chr3:20984807-20985913 FORWARD LENGTH=263
          Length = 262

 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 19/160 (11%)

Query: 130 PYSFKVRDGWEEVPVSIAD-LGGTE---------IDLRFANSKQGRLFVVVAPVRRFAEL 179
           PY F +   W+++   IA+ L G           I+++F N KQG++ VV +P+ R    
Sbjct: 105 PYQFVLPPNWKQL--RIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTNK 162

Query: 180 DDATIEKIGTPEKVIDAFGPEVIGENVEGKVLSMATAEYSG-RTYYQFELEPP------H 232
            +ATIE +G PEKVI + GP V G + +   L   + E  G +TYY++ LE P      H
Sbjct: 163 PNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSH 222

Query: 233 IFITATAAGNRLYLFNVTANGLQWKRNYNDLKQIAESFRV 272
               ATA G+ + LF V+A   QW+ +   L+ I +SF++
Sbjct: 223 NLAKATAKGSTVVLFVVSATEKQWQSSQKTLEAILDSFQL 262



>AT3G63540.1 | chr3:23459372-23459803 REVERSE LENGTH=144
          Length = 143

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 20/149 (13%)

Query: 134 KVRDGWEEVPVSIADLGGTEIDLRFANSK---QGRLFVVVAPVRRFAE----LDDATIEK 186
           +V +GW+E  VS  + G    D  F N K   +      +A  R+ A     L++  +  
Sbjct: 3   EVEEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSD 62

Query: 187 IGTPEKVIDAFGPEVIGENVEGKVLSMATAEYSGRTYYQFELEP--PHIFITATAAGNRL 244
           +   + +  A            KV+S    + +G+ YY +E++    H  IT T + N+L
Sbjct: 63  VELQDLIAGA-----------DKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNKL 111

Query: 245 YLFNVTANGLQWKRNYNDLKQIAESFRVV 273
           Y   V A   +W R+++ L  + +SF+ V
Sbjct: 112 YAHFVNAPAPEWNRDHDTLTHLRDSFKTV 140



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,195,808
Number of extensions: 205209
Number of successful extensions: 360
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 3
Length of query: 273
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 176
Effective length of database: 8,447,217
Effective search space: 1486710192
Effective search space used: 1486710192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)