Os01g0805300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Photosystem II oxygen evolving complex protein PsbP family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0805300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Photosystem II oxygen evolving complex protein PsbP family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.79 | 0.469 | 13 | -2.65 | 0.426 | -2.05 | -0.00428 | -2.05 | -0.98 | 13.7 | 2 | 257 | 21.2 | -- |
| 106.93 | 0.482 | 13 | -2.62 | 0.436 | -1.99 | 0.323 | -- | -1.01 | 13.7 | 2.17 | 253 | 21.5 | -- |
| 99.79 | 0.465 | 13 | -2.65 | 0.424 | -2.06 | -- | -2.05 | -0.979 | 13.6 | 2.028 | 257 | 21.2 | -- |
| 107.56 | 0.483 | 13 | -2.6 | 0.406 | -2.09 | -- | -- | -0.979 | 13.3 | 2.235 | 253 | 21.5 | -- |
| 105.04 | 0.477 | 13 | -2.63 | -- | -2.1 | -- | -1.82 | -0.994 | -- | 2.17 | 248 | 22.5 | -- |
| 161.89 | 0.596 | 13 | -2.52 | 1.65 | -- | 1.37 | -- | -0.986 | 16.4 | -- | -- | -- | -- |
| 166.99 | 0.605 | 13 | -2.51 | 1.66 | -- | -- | -- | -0.979 | 16.4 | -- | -- | -- | -- |
| 112.22 | 0.493 | 13 | -2.57 | -- | -2.1 | -- | -- | -0.98 | -- | 2.321 | 249 | 22.8 | -- |
| 277.51 | 0.776 | 12.9 | -- | 0.337 | -2.07 | -- | -- | -0.721 | 13.1 | 9.997 | 175 | 22.4 | -- |
| 313.92 | 0.828 | 13 | -2.58 | -- | -- | -- | -- | -1.02 | -- | -- | -- | -- | -- |
| 333.38 | 0.854 | 13 | -- | 1.7 | -- | -- | -- | -0.699 | 16.4 | -- | -- | -- | -- |
| 279.62 | 0.779 | 12.9 | -- | -- | -2.05 | -- | -- | -0.717 | -- | 10 | 180 | 23.4 | -- |
| 489.18 | 1.03 | 13 | -- | -- | -- | -- | -- | -0.737 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.55 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 3 | 100.58 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 5 | 101.16 | radiation | 1.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 6 | 101.22 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 13 |
| 9 | 101.36 | radiation | 1.0 | 270 | < th | dose independent | sin | 4 | NA |
| 12 | 101.50 | radiation | 1.0 | 270 | > th | dose independent | sin | 4 | NA |
| 14 | 101.52 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 8 |
| 25 | 103.03 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 13 |
| 28 | 103.10 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 49 | 104.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 19 |
| 51 | 104.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 74 | 104.68 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 81 | 105.18 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 82 | 105.18 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 84 | 105.18 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 85 | 105.18 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 88 | 105.18 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 89 | 105.18 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 93 | 105.18 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 95 | 105.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 21 |
| 96 | 105.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 101 | 105.46 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 102 | 105.70 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 21 |
| 103 | 106.06 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 114 | 106.25 | wind | 7.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 116 | 106.25 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 118 | 106.25 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 119 | 106.25 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 122 | 106.25 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 123 | 106.25 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 128 | 106.25 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 21 |
| 131 | 106.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 5 |
| 132 | 106.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 164 | 107.49 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 168 | 107.62 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 172 | 107.80 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 179 | 108.03 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 3 |
| 180 | 108.03 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 197 | 108.22 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 7 |
| 198 | 108.23 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 199 | 108.25 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 208 | 108.59 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 21 |
| 219 | 108.85 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 227 | 109.14 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 233 | 109.30 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 7 | 20 |
| 236 | 109.35 | wind | 9.0 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 238 | 109.38 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 10 |
| 248 | 109.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 261 | 109.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 266 | 109.84 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 341 | 110.58 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 352 | 110.75 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 359 | 110.90 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 377 | 111.12 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 388 | 111.29 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 390 | 111.33 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 7 |
| 410 | 111.51 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 422 | 111.68 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 7 |
| 424 | 111.68 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 7 |
| 430 | 111.82 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 9 |
| 432 | 111.82 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 436 | 111.88 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 446 | 112.03 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 467 | 112.23 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 498 | 112.37 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 9 |
| 507 | 112.42 | radiation | 20.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 516 | 112.52 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 517 | 112.52 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 518 | 112.52 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 9 |
| 519 | 112.52 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 535 | 112.71 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 552 | 112.92 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 17 |
| 555 | 112.93 | radiation | 10.0 | 270 | < th | dose independent | rect. | 18 | 7 |
| 565 | 113.07 | radiation | 1.0 | 90 | > th | dose independent | rect. | 7 | 8 |
| 568 | 113.12 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 7 |
| 569 | 113.12 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 7 |
| 573 | 113.12 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 17 |
| 574 | 113.12 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 575 | 113.12 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 18 | 7 |
| 622 | 113.42 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 640 | 113.50 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 669 | 113.93 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 673 | 113.94 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 7 |
| 694 | 114.03 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 699 | 114.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 14 |
| 702 | 114.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 14 |
| 738 | 114.30 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 19 |
| 776 | 114.59 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 798 | 114.75 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 8 | 19 |
| 799 | 114.75 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 8 | 19 |
| 812 | 114.83 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 7 |
| 852 | 114.96 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 870 | 115.09 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 3 | 18 |
| 877 | 115.13 | radiation | 20.0 | 90 | < th | dose independent | rect. | 15 | 16 |
| 897 | 115.32 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 17 |
| 898 | 115.32 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 906 | 115.33 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 925 | 115.45 | humidity | 80.0 | 10 | > th | dose independent | rect. | 3 | 5 |
| 961 | 115.61 | wind | 9.0 | 270 | < th | dose dependent | rect. | 18 | 7 |
| 986 | 115.67 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 7 |