BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0805300 Os01g0805300|AK065795
(272 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0805300 Photosystem II oxygen evolving complex protein... 464 e-131
Os12g0190200 Similar to Thylakoid lumenal 29.8 kDa protein,... 87 1e-17
>Os01g0805300 Photosystem II oxygen evolving complex protein PsbP family protein
Length = 272
Score = 464 bits (1193), Expect = e-131, Method: Compositional matrix adjust.
Identities = 233/272 (85%), Positives = 233/272 (85%)
Query: 1 MASSSVFSPLLRALRPSTSCSGRSSATHDNSXXXXXXXXXXXXXXXXXXXXXSHRREXXX 60
MASSSVFSPLLRALRPSTSCSGRSSATHDNS SHRRE
Sbjct: 1 MASSSVFSPLLRALRPSTSCSGRSSATHDNSAAAVVAAGGAAPRPAPLAAVVSHRRELLL 60
Query: 61 XXXXXXXXXXXXXXXEAREVEVGAVLPPAASNPGFVFFRATSKDTPALRAGNVQPYEFIL 120
EAREVEVGAVLPPAASNPGFVFFRATSKDTPALRAGNVQPYEFIL
Sbjct: 61 GAALGAAFLKAPLPAEAREVEVGAVLPPAASNPGFVFFRATSKDTPALRAGNVQPYEFIL 120
Query: 121 PPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKVQVVASPLIRLTNRPNATIEDI 180
PPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKVQVVASPLIRLTNRPNATIEDI
Sbjct: 121 PPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKVQVVASPLIRLTNRPNATIEDI 180
Query: 181 GSPERLIASLGPFVTGNTFDSDELVDTSVEKIDGQTYYSYVLETPLALTGSHNLAKATAK 240
GSPERLIASLGPFVTGNTFDSDELVDTSVEKIDGQTYYSYVLETPLALTGSHNLAKATAK
Sbjct: 181 GSPERLIASLGPFVTGNTFDSDELVDTSVEKIDGQTYYSYVLETPLALTGSHNLAKATAK 240
Query: 241 GNTVVLFVASASDKQWQSSEKVLKTIVDSFKV 272
GNTVVLFVASASDKQWQSSEKVLKTIVDSFKV
Sbjct: 241 GNTVVLFVASASDKQWQSSEKVLKTIVDSFKV 272
>Os12g0190200 Similar to Thylakoid lumenal 29.8 kDa protein, chloroplast
precursor
Length = 273
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 17/161 (10%)
Query: 113 VQPYEFILPPTWKQTRVANI-LSGNYCQPKCAEPWVEVKFEDDKQGKVQVVASPLIRLTN 171
+ PY F + W++ V+ L G ++++F + KQG++ VV +P+ R
Sbjct: 128 IIPYSFKVRDGWEEVPVSIADLGGTE---------IDLRFANSKQGRLFVVVAPVRRFAE 178
Query: 172 RPNATIEDIGSPERLIASLGPFVTGNTFDSDELVDTSVEKIDGQTYYSYVLETPLALTGS 231
+ATIE IG+PE++I + GP V G + +++ + + G+TYY + LE P
Sbjct: 179 LDDATIEKIGTPEKVIDAFGPEVIGENVEG-KVLSMATAEYSGRTYYQFELEPP------ 231
Query: 232 HNLAKATAKGNTVVLFVASASDKQWQSSEKVLKTIVDSFKV 272
H ATA GN + LF +A+ QW+ + LK I +SF+V
Sbjct: 232 HIFITATAAGNRLYLFNVTANGLQWKRNYNDLKQIAESFRV 272
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.128 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,017,792
Number of extensions: 298351
Number of successful extensions: 503
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 2
Length of query: 272
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 173
Effective length of database: 11,866,615
Effective search space: 2052924395
Effective search space used: 2052924395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 155 (64.3 bits)