BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0805300 Os01g0805300|AK065795
         (272 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56650.1  | chr3:20984807-20985913 FORWARD LENGTH=263          334   3e-92
AT1G77090.1  | chr1:28960576-28961875 REVERSE LENGTH=261           83   1e-16
AT3G55330.1  | chr3:20514031-20515275 REVERSE LENGTH=231           50   2e-06

>AT3G56650.1 | chr3:20984807-20985913 FORWARD LENGTH=263
          Length = 262

 Score =  334 bits (856), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 151/196 (77%), Positives = 177/196 (90%)

Query: 77  AREVEVGAVLPPAASNPGFVFFRATSKDTPALRAGNVQPYEFILPPTWKQTRVANILSGN 136
           AREVEVG+ LP + S+P FV F+A   DTPALRAGNVQPY+F+LPP WKQ R+ANILSGN
Sbjct: 67  AREVEVGSYLPLSPSDPSFVLFKAKPSDTPALRAGNVQPYQFVLPPNWKQLRIANILSGN 126

Query: 137 YCQPKCAEPWVEVKFEDDKQGKVQVVASPLIRLTNRPNATIEDIGSPERLIASLGPFVTG 196
           YCQPKCAEPW+EVKFE++KQGKVQVVASPLIRLTN+PNATIED+G PE++IASLGPFVTG
Sbjct: 127 YCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTNKPNATIEDLGEPEKVIASLGPFVTG 186

Query: 197 NTFDSDELVDTSVEKIDGQTYYSYVLETPLALTGSHNLAKATAKGNTVVLFVASASDKQW 256
           N++DSDEL+ TS+EKI  QTYY YVLETP ALTGSHNLAKATAKG+TVVLFV SA++KQW
Sbjct: 187 NSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKATAKGSTVVLFVVSATEKQW 246

Query: 257 QSSEKVLKTIVDSFKV 272
           QSS+K L+ I+DSF++
Sbjct: 247 QSSQKTLEAILDSFQL 262



>AT1G77090.1 | chr1:28960576-28961875 REVERSE LENGTH=261
          Length = 260

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 19/163 (11%)

Query: 113 VQPYEFILPPTWKQTRVANI-LSGNYCQPKCAEPWVEVKFEDDKQGKVQVVASPLIRLTN 171
           + PY F +P  W +  V+   L G           ++++F   K+G++ V+ +P++R  +
Sbjct: 113 IIPYAFSVPQDWNEVPVSIADLGGTE---------IDLRFASPKEGRLSVIVAPVLRFAD 163

Query: 172 R--PNATIEDIGSPERLIASLGPFVTGNTFDSDELVDTSVEKIDGQTYYSYVLETPLALT 229
               +  IE+IG P ++I + GP V G   +  +++ ++V + DG+ YY + LE P    
Sbjct: 164 NLGDDVKIENIGQPAKVINAFGPEVIGENVEG-KVLSSNVAEHDGRLYYQFELEPP---- 218

Query: 230 GSHNLAKATAKGNTVVLFVASASDKQWQSSEKVLKTIVDSFKV 272
             H L  ATA GN + LF  + +  QW+   K LK I  SF++
Sbjct: 219 --HVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRI 259



>AT3G55330.1 | chr3:20514031-20515275 REVERSE LENGTH=231
          Length = 230

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 3/130 (2%)

Query: 146 WVEVKFE-DDKQGK--VQVVASPLIRLTNRPNATIEDIGSPERLIASLGPFVTGNTFDSD 202
           W EV  E  DK  K  ++ + S  + L      TI++ G P+++  +L   V        
Sbjct: 99  WQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQKT 158

Query: 203 ELVDTSVEKIDGQTYYSYVLETPLALTGSHNLAKATAKGNTVVLFVASASDKQWQSSEKV 262
            L+D S   +DG+TYY +           H L   T            A++++W+  +  
Sbjct: 159 TLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMKDR 218

Query: 263 LKTIVDSFKV 272
           L T+VDSFK+
Sbjct: 219 LHTVVDSFKI 228



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.128    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,051,759
Number of extensions: 189831
Number of successful extensions: 363
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 3
Length of query: 272
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 175
Effective length of database: 8,447,217
Effective search space: 1478262975
Effective search space used: 1478262975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)