BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0170600 Os12g0170600|AK067033
(444 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0170600 Similar to Alpha-1,4-fucosyltransferase 602 e-172
Os04g0432366 Glycosyl transferase, family 10 protein 270 1e-72
Os04g0432333 124 2e-28
Os08g0472600 Similar to Alpha1,3-fucosyltransferase (Fragment) 77 2e-14
>Os12g0170600 Similar to Alpha-1,4-fucosyltransferase
Length = 444
Score = 602 bits (1551), Expect = e-172, Method: Compositional matrix adjust.
Identities = 286/286 (100%), Positives = 286/286 (100%)
Query: 159 ALDGVYTCRCGVSCVWSKSAAAVDRPDALLFEGATPPPQRMKGLPLRVYLDLEAARKPTG 218
ALDGVYTCRCGVSCVWSKSAAAVDRPDALLFEGATPPPQRMKGLPLRVYLDLEAARKPTG
Sbjct: 159 ALDGVYTCRCGVSCVWSKSAAAVDRPDALLFEGATPPPQRMKGLPLRVYLDLEAARKPTG 218
Query: 219 FEDIFIGYHAKDDVQVTYAGKSFHTSRSYHVSTEKRNDALIYWSSSRCLPHRDKVAKDFL 278
FEDIFIGYHAKDDVQVTYAGKSFHTSRSYHVSTEKRNDALIYWSSSRCLPHRDKVAKDFL
Sbjct: 219 FEDIFIGYHAKDDVQVTYAGKSFHTSRSYHVSTEKRNDALIYWSSSRCLPHRDKVAKDFL 278
Query: 279 SLVPHHSFGKCLNNVDGPDMALSMYPVCSTNDNGKPHWWDHLHCAMSHYKFVLAIENTKT 338
SLVPHHSFGKCLNNVDGPDMALSMYPVCSTNDNGKPHWWDHLHCAMSHYKFVLAIENTKT
Sbjct: 279 SLVPHHSFGKCLNNVDGPDMALSMYPVCSTNDNGKPHWWDHLHCAMSHYKFVLAIENTKT 338
Query: 339 ESYVTEKLFYALEAGSVPIYFGAPNVWDFIPPNSIIDASKFSSLRELASYVKAVANDPVA 398
ESYVTEKLFYALEAGSVPIYFGAPNVWDFIPPNSIIDASKFSSLRELASYVKAVANDPVA
Sbjct: 339 ESYVTEKLFYALEAGSVPIYFGAPNVWDFIPPNSIIDASKFSSLRELASYVKAVANDPVA 398
Query: 399 YAEYHAWRRCGTLGNFGRSREMSLDTLPCRLCELVSKRGGRNADAL 444
YAEYHAWRRCGTLGNFGRSREMSLDTLPCRLCELVSKRGGRNADAL
Sbjct: 399 YAEYHAWRRCGTLGNFGRSREMSLDTLPCRLCELVSKRGGRNADAL 444
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/51 (100%), Positives = 51/51 (100%)
Query: 1 ILLPIASPSSETEISRSGEEAKLPEASGGGGGARHLDALPEADQLHGPDAG 51
ILLPIASPSSETEISRSGEEAKLPEASGGGGGARHLDALPEADQLHGPDAG
Sbjct: 1 ILLPIASPSSETEISRSGEEAKLPEASGGGGGARHLDALPEADQLHGPDAG 51
>Os04g0432366 Glycosyl transferase, family 10 protein
Length = 196
Score = 270 bits (691), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 123/189 (65%), Positives = 146/189 (77%)
Query: 255 NDALIYWSSSRCLPHRDKVAKDFLSLVPHHSFGKCLNNVDGPDMALSMYPVCSTNDNGKP 314
D L+YWSSSRC HR+K+A++ +P HSFG+C NNV G D AL +YP C+ + +G
Sbjct: 2 QDVLVYWSSSRCFEHRNKIARELFRHLPAHSFGRCENNVGGGDKALELYPDCARDGHGAA 61
Query: 315 HWWDHLHCAMSHYKFVLAIENTKTESYVTEKLFYALEAGSVPIYFGAPNVWDFIPPNSII 374
WWDHLHCAMSHYKFVLAIENT +SY TEKL+YALEAGSVPIYFGAPN D PP S I
Sbjct: 62 EWWDHLHCAMSHYKFVLAIENTIADSYSTEKLYYALEAGSVPIYFGAPNARDLAPPGSYI 121
Query: 375 DASKFSSLRELASYVKAVANDPVAYAEYHAWRRCGTLGNFGRSREMSLDTLPCRLCELVS 434
D + F+S ELA+YV+ VA DP AYAE+HAWRRCG LG +GR+R +SLDTLPCRLCE S
Sbjct: 122 DGAAFASAEELAAYVREVAGDPAAYAEFHAWRRCGVLGGYGRNRLVSLDTLPCRLCERAS 181
Query: 435 KRGGRNADA 443
+ GGR+A A
Sbjct: 182 RMGGRHAPA 190
>Os04g0432333
Length = 269
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Query: 160 LDGVYTCRCGVSCVWSKSAAAV-DRPDALLFEGATPPPQRMKGLPLRVYLDLEAARKPTG 218
LDGVY CRCG++C+WS++ A+ D PD +L+E PP R +G PLR ++D+E RK +G
Sbjct: 166 LDGVYQCRCGLTCLWSRNEEALADTPDVVLYEIWPPPDTRKQGEPLRAFMDIEPTRKRSG 225
Query: 219 FEDIFIGYHAKDDVQVTYAGKSFHTSRSYHVSTEKRN 255
EDIFIGYHA DDVQVTYAGK F + +YHV+T KR+
Sbjct: 226 HEDIFIGYHADDDVQVTYAGKFFRITHNYHVATHKRD 262
>Os08g0472600 Similar to Alpha1,3-fucosyltransferase (Fragment)
Length = 513
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 288 KCLNNVDGPDMALSMYPVCSTNDNGKPHWWDHLHCAMSHYKFVLAIENTKTESYVTEKLF 347
+ L ++ D+ + Y C N +GK + L YKF LA EN+ E YVTEK F
Sbjct: 240 QALEMLESLDVKIDSYGSCHRNHDGKVDKVETL----KRYKFSLAFENSNEEDYVTEKFF 295
Query: 348 YALEAGSVPIYFGAPNVWDFIP-PNSIIDASKFSSLRELASYVKAVANDPVAYAEYHAWR 406
+L G++P+ GAPN+ +F P +I+ + + +A +K +A++ A+ + W+
Sbjct: 296 QSLVTGAIPVVIGAPNIQEFSPGEGAILHIKELDDVPSIAKTMKHIASNQEAFNQSLRWK 355
Query: 407 RCGTLGNFGRSREMSLDTLPCRLCELVSKR 436
G +F +M+ CRLC V+ +
Sbjct: 356 YDGPSDSFKALIDMAAVHSSCRLCIHVATK 385
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,806,594
Number of extensions: 594584
Number of successful extensions: 2374
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2372
Number of HSP's successfully gapped: 5
Length of query: 444
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 340
Effective length of database: 11,605,545
Effective search space: 3945885300
Effective search space used: 3945885300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)