BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0169700 Os12g0169700|AK103904
(273 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0169700 Similar to Ferripyochelin-binding protein-like 559 e-159
Os07g0642900 Trimeric LpxA-like domain containing protein 538 e-153
Os01g0283100 Similar to Ferripyochelin-binding protein-like 396 e-111
Os02g0508000 Trimeric LpxA-like domain containing protein 92 4e-19
>Os12g0169700 Similar to Ferripyochelin-binding protein-like
Length = 273
Score = 559 bits (1440), Expect = e-159, Method: Compositional matrix adjust.
Identities = 273/273 (100%), Positives = 273/273 (100%)
Query: 1 MGTLGRAIYTVGKWIRGTGQAMDRLGSTIQGGLRVEEQLSRHRTIMNIFEKEPRVHKDVF 60
MGTLGRAIYTVGKWIRGTGQAMDRLGSTIQGGLRVEEQLSRHRTIMNIFEKEPRVHKDVF
Sbjct: 1 MGTLGRAIYTVGKWIRGTGQAMDRLGSTIQGGLRVEEQLSRHRTIMNIFEKEPRVHKDVF 60
Query: 61 VAPSAAVIGDVEIGHGSSIWYGSILRGDVNSIHIGSGSNIQDNSLVHVAKANISGKVLPT 120
VAPSAAVIGDVEIGHGSSIWYGSILRGDVNSIHIGSGSNIQDNSLVHVAKANISGKVLPT
Sbjct: 61 VAPSAAVIGDVEIGHGSSIWYGSILRGDVNSIHIGSGSNIQDNSLVHVAKANISGKVLPT 120
Query: 121 IIGNNVTIGHSAVLHACTVEDEAFVGMGATLLDGVVVEKHSMVGAGSLVKQNTRIPSGEV 180
IIGNNVTIGHSAVLHACTVEDEAFVGMGATLLDGVVVEKHSMVGAGSLVKQNTRIPSGEV
Sbjct: 121 IIGNNVTIGHSAVLHACTVEDEAFVGMGATLLDGVVVEKHSMVGAGSLVKQNTRIPSGEV 180
Query: 181 WVGNPAKFLRKLTEEEIAFIAQSATNYINLAQVHAAENSKTFDEIELEKMLRKKYAHKDE 240
WVGNPAKFLRKLTEEEIAFIAQSATNYINLAQVHAAENSKTFDEIELEKMLRKKYAHKDE
Sbjct: 181 WVGNPAKFLRKLTEEEIAFIAQSATNYINLAQVHAAENSKTFDEIELEKMLRKKYAHKDE 240
Query: 241 EYDSMLGVVREIPPELILPDNILPNKAQKAVAH 273
EYDSMLGVVREIPPELILPDNILPNKAQKAVAH
Sbjct: 241 EYDSMLGVVREIPPELILPDNILPNKAQKAVAH 273
>Os07g0642900 Trimeric LpxA-like domain containing protein
Length = 273
Score = 538 bits (1385), Expect = e-153, Method: Compositional matrix adjust.
Identities = 259/273 (94%), Positives = 269/273 (98%)
Query: 1 MGTLGRAIYTVGKWIRGTGQAMDRLGSTIQGGLRVEEQLSRHRTIMNIFEKEPRVHKDVF 60
MGTLGRAIYT GKWIRGTGQAMDRLGSTIQGGLRV+EQL RHRTIMNIFEKEPR+HKDVF
Sbjct: 1 MGTLGRAIYTAGKWIRGTGQAMDRLGSTIQGGLRVDEQLPRHRTIMNIFEKEPRIHKDVF 60
Query: 61 VAPSAAVIGDVEIGHGSSIWYGSILRGDVNSIHIGSGSNIQDNSLVHVAKANISGKVLPT 120
VAPSAAVIGD+EIGHGSSIWYGSILRGDVNSIHIG G+NIQDNSLVHV+KANISGKVLPT
Sbjct: 61 VAPSAAVIGDIEIGHGSSIWYGSILRGDVNSIHIGVGTNIQDNSLVHVSKANISGKVLPT 120
Query: 121 IIGNNVTIGHSAVLHACTVEDEAFVGMGATLLDGVVVEKHSMVGAGSLVKQNTRIPSGEV 180
IIGN+VTIGHSAVLHAC VEDEAFVGMGATLLDGVVVEKHSMVGAGSLVKQNTRIPSGEV
Sbjct: 121 IIGNSVTIGHSAVLHACIVEDEAFVGMGATLLDGVVVEKHSMVGAGSLVKQNTRIPSGEV 180
Query: 181 WVGNPAKFLRKLTEEEIAFIAQSATNYINLAQVHAAENSKTFDEIELEKMLRKKYAHKDE 240
WVGNPAKFLRKLTEEE+AFIAQSATNYINLAQVHAAEN+KTFDEIELEKMLRKK+AHKDE
Sbjct: 181 WVGNPAKFLRKLTEEEMAFIAQSATNYINLAQVHAAENAKTFDEIELEKMLRKKFAHKDE 240
Query: 241 EYDSMLGVVREIPPELILPDNILPNKAQKAVAH 273
EYDSMLGVVREIPPELILPD+ILPNKAQKAVAH
Sbjct: 241 EYDSMLGVVREIPPELILPDSILPNKAQKAVAH 273
>Os01g0283100 Similar to Ferripyochelin-binding protein-like
Length = 263
Score = 396 bits (1018), Expect = e-111, Method: Compositional matrix adjust.
Identities = 180/256 (70%), Positives = 215/256 (83%)
Query: 1 MGTLGRAIYTVGKWIRGTGQAMDRLGSTIQGGLRVEEQLSRHRTIMNIFEKEPRVHKDVF 60
M LG+A Y VG WIR TGQA+DRLG +QG EQLSRHRT+MNIF+K P VH+D F
Sbjct: 1 MAGLGKAFYAVGFWIRETGQALDRLGCRLQGNYYFHEQLSRHRTLMNIFDKTPHVHRDAF 60
Query: 61 VAPSAAVIGDVEIGHGSSIWYGSILRGDVNSIHIGSGSNIQDNSLVHVAKANISGKVLPT 120
VAPSA++IGD+++G G+SIWYG +LRGD N++ IGSG+NIQDNSLVHVAK+N+SGKV PT
Sbjct: 61 VAPSASLIGDIQVGQGASIWYGCVLRGDANNVQIGSGTNIQDNSLVHVAKSNLSGKVFPT 120
Query: 121 IIGNNVTIGHSAVLHACTVEDEAFVGMGATLLDGVVVEKHSMVGAGSLVKQNTRIPSGEV 180
IIG+NVT+GHSAVL CTVEDEAFVGMGATLLDGVVVEKH MV AG+LV+QNTRIP GEV
Sbjct: 121 IIGDNVTVGHSAVLQGCTVEDEAFVGMGATLLDGVVVEKHGMVAAGALVRQNTRIPCGEV 180
Query: 181 WVGNPAKFLRKLTEEEIAFIAQSATNYINLAQVHAAENSKTFDEIELEKMLRKKYAHKDE 240
W GNPAKFLRKLT++EI FI +SA+NY LA+ HAAEN+K ++ E EK+ RKK AH+DE
Sbjct: 181 WGGNPAKFLRKLTDDEITFIKESASNYSTLAKAHAAENAKPVEKTEFEKLFRKKSAHQDE 240
Query: 241 EYDSMLGVVREIPPEL 256
E+DSM+G RE+ PEL
Sbjct: 241 EHDSMIGATREVTPEL 256
>Os02g0508000 Trimeric LpxA-like domain containing protein
Length = 154
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 76/118 (64%), Gaps = 2/118 (1%)
Query: 120 TIIGNNVTIGHSAVLHACTVEDEAFVGMGATLLDGVVVEKHSMVGAGSLVKQNTRIPSGE 179
T++ VT+G +L +CT+E E +G + L++G +VE +S++ AGS++ RIP+GE
Sbjct: 35 TLVDRYVTVGAYCLLRSCTIEPECIIGQHSILMEGSLVETNSILEAGSVLPPGRRIPTGE 94
Query: 180 VWVGNPAKFLRKLTEEEIAFIAQSATNYINLAQVHAAEN-SKTFDEIELEKMLRKKYA 236
+W GNPA+F+RKLT EEI I + A +L Q H +E + +E+EK L+K ++
Sbjct: 95 LWAGNPARFVRKLTNEEIMEIPKLAVAINDLMQSHFSEFLPYSTAYLEVEK-LKKSFS 151
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,475,686
Number of extensions: 401102
Number of successful extensions: 877
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 876
Number of HSP's successfully gapped: 4
Length of query: 273
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 174
Effective length of database: 11,866,615
Effective search space: 2064791010
Effective search space used: 2064791010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)