Os07g0642900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Trimeric LpxA-like domain containing protein.
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Os07g0642900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Trimeric LpxA-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.73 | 0.523 | 5.85 | 0.31 | 0.299 | -1.54 | 0.243 | 0.0828 | 0.2 | 20.8 | 28.85 | 89 | -- | -- |
| 123.74 | 0.518 | 5.85 | 0.322 | 0.298 | -1.54 | 0.254 | -- | 0.203 | 20.9 | 28.8 | 89 | -- | -- |
| 123.9 | 0.518 | 5.85 | 0.294 | 0.303 | -1.51 | -- | 0.167 | 0.202 | 20.5 | 28.88 | 87 | -- | -- |
| 123.93 | 0.518 | 5.85 | 0.322 | 0.301 | -1.52 | -- | -- | 0.208 | 20.5 | 28.8 | 89 | -- | -- |
| 127.7 | 0.526 | 5.85 | 0.251 | -- | -1.53 | -- | 0.317 | 0.187 | -- | 29.19 | 200 | -- | -- |
| 155.08 | 0.584 | 5.78 | 0.703 | 0.59 | -- | -0.153 | -- | 0.525 | 16.9 | -- | -- | -- | -- |
| 155.14 | 0.583 | 5.78 | 0.702 | 0.589 | -- | -- | -- | 0.524 | 16.9 | -- | -- | -- | -- |
| 127.8 | 0.527 | 5.84 | 0.303 | -- | -1.56 | -- | -- | 0.197 | -- | 28.89 | 201 | -- | -- |
| 126.36 | 0.524 | 5.86 | -- | 0.301 | -1.66 | -- | -- | 0.147 | 21.2 | 28.8 | 89 | -- | -- |
| 173.46 | 0.615 | 5.77 | 0.681 | -- | -- | -- | -- | 0.509 | -- | -- | -- | -- | -- |
| 168.14 | 0.607 | 5.8 | -- | 0.577 | -- | -- | -- | 0.446 | 16.9 | -- | -- | -- | -- |
| 129.99 | 0.531 | 5.86 | -- | -- | -1.65 | -- | -- | 0.143 | -- | 28.7 | 204 | -- | -- |
| 185.68 | 0.636 | 5.79 | -- | -- | -- | -- | -- | 0.434 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 119.35 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 2 | 119.62 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 3 | 119.68 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 15 | 120.69 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 28 | 121.66 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 45 | 122.33 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 67 | 123.02 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 77 | 123.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 83 | 123.59 | temperature | 15 | 30 | > th | dose dependent | rect. | 8 | 18 |
| 89 | 123.72 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 106 | 124.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 110 | 124.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 118 | 124.48 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 120 | 124.49 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 135 | 124.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 178 | 125.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 179 | 125.63 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 181 | 125.68 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 198 | 126.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 8 |
| 212 | 126.40 | temperature | 15 | 30 | > th | dose dependent | rect. | 8 | 16 |
| 226 | 126.55 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 276 | 126.99 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 321 | 127.30 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 15 |
| 370 | 127.59 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 383 | 127.66 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 403 | 127.72 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 426 | 127.83 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 453 | 127.94 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 494 | 128.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 21 |
| 533 | 128.27 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 551 | 128.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 21 |
| 567 | 128.35 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 581 | 128.40 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 9 |
| 606 | 128.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 687 | 128.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 705 | 128.68 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 871 | 128.94 | temperature | 10 | 1440 | > th | dose dependent | sin | 14 | NA |
| 894 | 128.98 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 903 | 128.99 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 982 | 129.08 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |