BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0166000 Os12g0166000|J033120E13
(207 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0166000 Peptidase S59, nucleoporin family protein 429 e-121
Os12g0165900 Peptidase S59, nucleoporin family protein 398 e-111
Os01g0383900 Peptidase S59, nucleoporin family protein 213 8e-56
Os03g0172000 Peptidase S59, nucleoporin family protein 152 2e-37
>Os12g0166000 Peptidase S59, nucleoporin family protein
Length = 207
Score = 429 bits (1102), Expect = e-121, Method: Compositional matrix adjust.
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 RCFAGPLAISPTRSTSIENGIQRDDRASNEPDTVTRHGNGTSVERLVPKLVHADYYTEPS 60
RCFAGPLAISPTRSTSIENGIQRDDRASNEPDTVTRHGNGTSVERLVPKLVHADYYTEPS
Sbjct: 1 RCFAGPLAISPTRSTSIENGIQRDDRASNEPDTVTRHGNGTSVERLVPKLVHADYYTEPS 60
Query: 61 LEELAAKERAEPGYCSRVRDFAVGRHDYGSIKFIGETDVRGLDLESIVEFNNREVIVYKD 120
LEELAAKERAEPGYCSRVRDFAVGRHDYGSIKFIGETDVRGLDLESIVEFNNREVIVYKD
Sbjct: 61 LEELAAKERAEPGYCSRVRDFAVGRHDYGSIKFIGETDVRGLDLESIVEFNNREVIVYKD 120
Query: 121 DSKKPPVGEGLNKAAVVTLLNIKCMNKKTGDQYTEGPRVDKYKEMLVKKAEEQGAEFISF 180
DSKKPPVGEGLNKAAVVTLLNIKCMNKKTGDQYTEGPRVDKYKEMLVKKAEEQGAEFISF
Sbjct: 121 DSKKPPVGEGLNKAAVVTLLNIKCMNKKTGDQYTEGPRVDKYKEMLVKKAEEQGAEFISF 180
Query: 181 DAVNGEWKFRVKHFSSYGFGEAEIVSC 207
DAVNGEWKFRVKHFSSYGFGEAEIVSC
Sbjct: 181 DAVNGEWKFRVKHFSSYGFGEAEIVSC 207
>Os12g0165900 Peptidase S59, nucleoporin family protein
Length = 215
Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/214 (91%), Positives = 199/214 (92%), Gaps = 8/214 (3%)
Query: 2 CFAGPLA--------ISPTRSTSIENGIQRDDRASNEPDTVTRHGNGTSVERLVPKLVHA 53
CFAG LA ISPTRSTSIENGI RDDRASNEPDTVTRHGNGTSVERL PKLVHA
Sbjct: 2 CFAGSLAEREFNKTAISPTRSTSIENGIHRDDRASNEPDTVTRHGNGTSVERLAPKLVHA 61
Query: 54 DYYTEPSLEELAAKERAEPGYCSRVRDFAVGRHDYGSIKFIGETDVRGLDLESIVEFNNR 113
DYYTEPSLEELAAKERAEPGYCSRVRDFAVGRHDYGSIKFIGET+VRGLDLESIVEFNNR
Sbjct: 62 DYYTEPSLEELAAKERAEPGYCSRVRDFAVGRHDYGSIKFIGETNVRGLDLESIVEFNNR 121
Query: 114 EVIVYKDDSKKPPVGEGLNKAAVVTLLNIKCMNKKTGDQYTEGPRVDKYKEMLVKKAEEQ 173
EVIVYKDDSKKPPVGEGLNKAAVVTLLNIKCMNKKTG+QYTEGPRV KYKE+LVKKAEEQ
Sbjct: 122 EVIVYKDDSKKPPVGEGLNKAAVVTLLNIKCMNKKTGEQYTEGPRVGKYKEILVKKAEEQ 181
Query: 174 GAEFISFDAVNGEWKFRVKHFSSYGFGEAEIVSC 207
GAEFISFDA GEWKFRVKHFSSYGFGEAEI SC
Sbjct: 182 GAEFISFDAAKGEWKFRVKHFSSYGFGEAEIDSC 215
>Os01g0383900 Peptidase S59, nucleoporin family protein
Length = 617
Score = 213 bits (542), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 98/152 (64%), Positives = 119/152 (78%)
Query: 43 VERLVPKLVHADYYTEPSLEELAAKERAEPGYCSRVRDFAVGRHDYGSIKFIGETDVRGL 102
E ++P+L ADYYT PS+ ELA ER EPGYCS V+ F VGRH YGS+KF GETD R L
Sbjct: 464 AESVLPRLYSADYYTVPSIVELAVGERDEPGYCSHVKGFTVGRHGYGSVKFDGETDWRRL 523
Query: 103 DLESIVEFNNREVIVYKDDSKKPPVGEGLNKAAVVTLLNIKCMNKKTGDQYTEGPRVDKY 162
D+ SIVEFN RE+IVY+D S PPVG+ LNK A VTLLN+KC+ +K G Q+TEGP VD+Y
Sbjct: 524 DIGSIVEFNEREIIVYRDVSNTPPVGQELNKPAEVTLLNVKCVEQKNGLQFTEGPAVDRY 583
Query: 163 KEMLVKKAEEQGAEFISFDAVNGEWKFRVKHF 194
KE+LV+ ++ GAEF+SFDA GEWKFRVK+F
Sbjct: 584 KEILVQWTKDHGAEFVSFDAAKGEWKFRVKNF 615
>Os03g0172000 Peptidase S59, nucleoporin family protein
Length = 1005
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 101/160 (63%), Gaps = 12/160 (7%)
Query: 41 TSVERLVPKLVHADYYTEPSLEELAAKERAEPGYCSRVRDFAVGRHDYGSIKFIGETDVR 100
S + + P L H DY+T+PS++EL +E A+PGYCSRV DF VGR YG I F G+TDVR
Sbjct: 1 MSSDPVFPVLRHGDYFTKPSIDELVEREAADPGYCSRVPDFVVGRVGYGRIHFPGDTDVR 60
Query: 101 GLDLESIVEFNNREVIVYKDDSKKPPVGEGLNKAAVVTL-LNIKCMNKKTGDQYTEGPRV 159
G+DL IV+F V VYKD++ KPP+G+GLNK A VTL LN+ + P
Sbjct: 61 GMDLNGIVKFGRHSVEVYKDEASKPPLGQGLNKPAEVTLMLNLSVL-----------PEP 109
Query: 160 DKYKEMLVKKAEEQGAEFISFDAVNGEWKFRVKHFSSYGF 199
E+L + +QGA F+SF+ +G WKF V HFS +G
Sbjct: 110 SALGELLKCQTRKQGARFVSFNHSSGRWKFEVDHFSRFGL 149
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,358,772
Number of extensions: 300862
Number of successful extensions: 474
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 4
Length of query: 207
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 111
Effective length of database: 12,023,257
Effective search space: 1334581527
Effective search space used: 1334581527
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 153 (63.5 bits)