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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0165900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase S59, nucleoporin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.018) R2 : 0.0085
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0747 (0.0378) R2dN8 : 0.011 R2N8 : 0.0085
σ : 0.338
deviance : 52.48
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.58 0.327 3.25 0.141 0.185 0.264 0.0866 1.07 -0.111 7.17 92.08 4883 -- --
50.04 0.329 3.25 0.0649 0.184 0.289 -0.0961 -- -0.132 6.71 91.92 4797 -- --
48.43 0.324 3.25 0.142 0.158 0.256 -- 1.12 -0.117 7.16 91 5892 -- --
50.04 0.329 3.25 0.0655 0.182 0.295 -- -- -0.137 6.87 92.72 4820 -- --
49.63 0.328 3.25 0.148 -- 0.238 -- 1.14 -0.0998 -- 91 5832 -- --
51.19 0.335 3.23 0.0504 0.152 -- -0.0579 -- -0.0719 6.95 -- -- -- --
51.2 0.335 3.23 0.0495 0.152 -- -- -- -0.0717 7.05 -- -- -- --
51.42 0.334 3.25 0.0719 -- 0.267 -- -- -0.127 -- 92 5693 -- --
50.16 0.33 3.25 -- 0.183 0.301 -- -- -0.143 6.79 92.01 4792 -- --
52.41 0.338 3.24 0.0525 -- -- -- -- -0.0689 -- -- -- -- --
51.26 0.335 3.23 -- 0.152 -- -- -- -0.0772 7.03 -- -- -- --
51.55 0.334 3.25 -- -- 0.256 -- -- -0.125 -- 91 5693 -- --
52.48 0.338 3.24 -- -- -- -- -- -0.0747 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 46.05 atmosphere 1000.0 30 > th dose independent rect. 3 23
4 46.53 atmosphere 1005.0 90 > th dose dependent rect. 2 1
6 46.65 atmosphere 1005.0 10 > th dose dependent rect. 2 2
7 46.77 atmosphere 1010.0 30 < th dose dependent rect. 2 1
11 46.89 wind 3.0 10 < th dose independent rect. 2 1
12 46.90 temperature 15.0 10 > th dose independent rect. 3 23
13 46.90 wind 3.0 10 < th dose dependent rect. 2 1
17 46.91 humidity 90.0 30 > th dose dependent rect. 2 1
23 46.96 temperature 10.0 10 > th dose independent rect. 2 1
25 46.96 temperature 30.0 10 < th dose independent rect. 2 1
26 46.96 humidity 50.0 10 > th dose independent rect. 2 1
29 46.96 atmosphere 995.0 10 > th dose independent rect. 2 1
30 46.96 atmosphere 1010.0 10 < th dose independent rect. 2 1
32 46.96 radiation 1.0 10 < th dose independent rect. 2 1
37 46.96 precipitation 0.1 10 < th dose independent rect. 2 1
39 46.96 temperature 10.0 10 > th dose dependent rect. 2 1
40 46.96 humidity 50.0 10 > th dose dependent rect. 2 1
41 46.96 radiation 1.0 10 < th dose dependent rect. 2 1
46 46.96 precipitation 0.1 10 < th dose dependent rect. 2 1
53 46.98 humidity 80.0 14400 < th dose dependent rect. 3 6
54 46.99 humidity 90.0 10 > th dose independent rect. 2 1
66 47.01 temperature 30.0 30 < th dose dependent rect. 2 1
106 47.05 wind 1.0 30 > th dose independent rect. 2 1
108 47.06 atmosphere 995.0 30 > th dose dependent rect. 2 1
112 47.09 atmosphere 1005.0 30 > th dose independent rect. 2 1
116 47.11 atmosphere 1000.0 720 > th dose independent rect. 3 8
117 47.11 radiation 1.0 43200 < th dose dependent rect. 3 1
122 47.17 wind 9.0 10 < th dose independent rect. 3 23
124 47.19 atmosphere 995.0 720 > th dose independent rect. 23 16
133 47.39 temperature 10.0 720 > th dose independent rect. 15 8
134 47.39 temperature 10.0 720 > th dose independent rect. 23 16
135 47.39 precipitation 0.1 30 < th dose independent rect. 3 23
136 47.39 precipitation 0.1 30 < th dose dependent rect. 3 23
137 47.40 precipitation 0.1 720 < th dose independent rect. 15 8
140 47.40 precipitation 0.1 720 < th dose dependent rect. 15 8
143 47.50 temperature 10.0 720 > th dose independent rect. 3 8
145 47.50 temperature 10.0 720 > th dose independent rect. 11 16
153 47.57 wind 9.0 1440 < th dose independent rect. 3 1
154 47.57 temperature 10.0 1440 > th dose independent rect. 3 1
157 47.57 temperature 30.0 1440 < th dose independent rect. 3 1
161 47.57 humidity 50.0 1440 > th dose independent rect. 3 1
170 47.57 atmosphere 995.0 1440 > th dose independent rect. 3 1
171 47.57 radiation 1.0 1440 < th dose independent rect. 3 1
191 47.57 temperature 10.0 1440 > th dose independent rect. 4 23
211 47.66 humidity 70.0 14400 > th dose independent rect. 8 1
213 47.70 wind 9.0 720 < th dose independent rect. 3 8
215 47.74 humidity 50.0 720 > th dose independent rect. 3 8
217 47.76 precipitation 0.1 720 < th dose independent rect. 11 16
218 47.76 precipitation 0.1 720 < th dose dependent rect. 11 16
221 47.81 humidity 70.0 14400 > th dose independent rect. 4 5
222 47.81 humidity 70.0 14400 > th dose independent rect. 24 9
223 47.81 humidity 70.0 14400 > th dose independent rect. 21 12
238 47.87 atmosphere 1005.0 90 < th dose dependent rect. 4 5
240 47.88 wind 1.0 14400 < th dose dependent rect. 6 1
248 47.94 humidity 70.0 14400 < th dose independent rect. 8 1
249 47.95 temperature 25.0 10 > th dose independent rect. 5 1
251 47.95 temperature 25.0 720 > th dose dependent rect. 2 6
253 47.96 atmosphere 1005.0 270 < th dose dependent rect. 5 1
255 47.97 atmosphere 1005.0 90 < th dose dependent rect. 4 7
264 48.05 atmosphere 1015.0 720 < th dose independent rect. 3 8
268 48.07 temperature 20.0 30 > th dose dependent rect. 5 1
271 48.10 humidity 50.0 30 > th dose independent rect. 3 23
273 48.11 humidity 90.0 90 < th dose independent rect. 2 1
274 48.11 radiation 40.0 720 < th dose independent rect. 15 8
293 48.16 humidity 70.0 14400 < th dose independent rect. 20 14
294 48.17 humidity 70.0 14400 < th dose independent rect. 6 4
341 48.28 wind 9.0 720 < th dose independent rect. 15 8
346 48.30 wind 5.0 14400 < th dose independent rect. 11 1
374 48.32 wind 1.0 14400 < th dose independent rect. 6 1
385 48.36 atmosphere 1000.0 30 > th dose independent rect. 23 23
395 48.40 temperature 25.0 720 > th dose independent rect. 3 5
396 48.40 atmosphere 1005.0 270 < th dose dependent sin 6 NA
397 48.40 wind 1.0 14400 < th dose dependent rect. 4 4
398 48.41 atmosphere 995.0 1440 > th dose independent rect. 3 12
400 48.42 atmosphere 995.0 720 > th dose independent rect. 15 8
401 48.42 humidity 70.0 4320 > th dose dependent rect. 3 8
410 48.44 atmosphere 995.0 30 > th dose dependent rect. 3 23
412 48.45 atmosphere 995.0 720 > th dose independent rect. 11 16
421 48.47 atmosphere 1005.0 720 < th dose dependent rect. 22 10
423 48.47 humidity 50.0 4320 > th dose dependent rect. 23 14
432 48.49 wind 1.0 14400 < th dose independent rect. 4 4
448 48.52 wind 1.0 14400 > th dose independent rect. 4 4
467 48.54 humidity 50.0 4320 > th dose dependent sin 6 NA
487 48.56 humidity 80.0 4320 > th dose independent rect. 3 10
488 48.56 atmosphere 1000.0 90 < th dose dependent rect. 7 2
496 48.57 humidity 80.0 4320 < th dose independent rect. 3 10
512 48.58 wind 5.0 14400 > th dose independent rect. 11 1
520 48.59 wind 1.0 14400 > th dose independent rect. 5 2
521 48.59 wind 5.0 14400 < th dose independent rect. 10 5
523 48.59 humidity 80.0 720 > th dose dependent rect. 3 1
536 48.59 humidity 90.0 4320 < th dose dependent rect. 23 16
538 48.60 humidity 90.0 720 > th dose independent rect. 3 1
583 48.62 atmosphere 1015.0 30 < th dose independent rect. 3 23
600 48.63 atmosphere 1000.0 720 < th dose dependent rect. 7 1
611 48.64 wind 5.0 14400 > th dose independent rect. 10 5
648 48.66 wind 7.0 14400 < th dose independent rect. 9 1
655 48.66 humidity 90.0 4320 < th dose dependent sin 6 NA
667 48.67 wind 3.0 14400 > th dose dependent rect. 11 1
683 48.68 atmosphere 1005.0 270 < th dose independent rect. 5 1
700 48.68 humidity 90.0 4320 < th dose dependent rect. 3 13
703 48.68 atmosphere 1005.0 270 < th dose dependent rect. 1 14
711 48.69 temperature 25.0 270 > th dose independent rect. 6 1
714 48.69 atmosphere 1000.0 720 > th dose independent rect. 20 15
760 48.71 humidity 70.0 4320 > th dose independent rect. 7 11
777 48.71 humidity 50.0 4320 > th dose dependent rect. 11 1
800 48.72 humidity 90.0 720 < th dose independent rect. 1 3
802 48.72 atmosphere 1005.0 10 < th dose independent rect. 5 5
804 48.72 humidity 70.0 4320 > th dose independent rect. 8 7
863 48.73 atmosphere 1005.0 90 < th dose dependent rect. 4 11
866 48.73 atmosphere 1005.0 90 < th dose dependent rect. 4 13
895 48.74 wind 1.0 14400 < th dose dependent rect. 2 6
913 48.75 humidity 70.0 4320 > th dose independent sin 3 NA
951 48.75 atmosphere 1005.0 270 < th dose dependent rect. 22 17
964 48.76 precipitation 0.1 720 < th dose independent rect. 3 8
972 48.76 humidity 90.0 4320 < th dose dependent rect. 11 2
977 48.76 precipitation 0.1 720 < th dose dependent rect. 3 8