BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0165900 Os12g0165900|J013043E19
         (215 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G10390.1  | chr1:3407265-3412045 REVERSE LENGTH=1042           241   2e-64
AT1G59660.1  | chr1:21924693-21929233 FORWARD LENGTH=998          228   2e-60
AT1G80680.1  | chr1:30324219-30328489 FORWARD LENGTH=1047         142   9e-35

>AT1G10390.1 | chr1:3407265-3412045 REVERSE LENGTH=1042
          Length = 1041

 Score =  241 bits (616), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 125/197 (63%), Positives = 151/197 (76%), Gaps = 12/197 (6%)

Query: 27   NGIHRDDRASNEP---DTVTRH---------GNGTSVERLAPKLVHADYYTEPSLEELAA 74
            NG  R D+AS +     T++ H          +G  +E L PKL  +DY+TEP ++ELAA
Sbjct: 840  NGTTRSDQASEKERPYKTLSGHRAGEAAIVYEHGADIEALMPKLRQSDYFTEPRIQELAA 899

Query: 75   KERAEPGYCSRVRDFAVGRHDYGSIKFIGETNVRGLDLESIVEFNNREVIVYKDDSKKPP 134
            KERA+PGYC RVRDF VGRH YGSIKF+GET+VR LDLES+V+FN REVIVY D+SKKP 
Sbjct: 900  KERADPGYCRRVRDFVVGRHGYGSIKFMGETDVRRLDLESLVQFNTREVIVYMDESKKPA 959

Query: 135  VGEGLNKAAVVTLLNIKCMNKKTGEQYTEGPRVGKYKEILVKKAEEQGAEFISFDAAKGE 194
            VG+GLNK A VTLLNIKC++KKTG+Q+TEG RV KYK +L KKAE QGAEF+SFD  KGE
Sbjct: 960  VGQGLNKPAEVTLLNIKCIDKKTGKQFTEGERVEKYKMMLKKKAEAQGAEFVSFDPVKGE 1019

Query: 195  WKFRVKHFSSYGFGEAE 211
            WKFRV+HFSSY  G+ +
Sbjct: 1020 WKFRVEHFSSYKLGDED 1036



>AT1G59660.1 | chr1:21924693-21929233 FORWARD LENGTH=998
          Length = 997

 Score =  228 bits (580), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 112/191 (58%), Positives = 141/191 (73%), Gaps = 2/191 (1%)

Query: 19  PTRSTSIENGIHRDDRASNEPDTVTRHGNGTSVERLAPKLVHADYYTEPSLEELAAKERA 78
           P +    +NG H +     + +      +G  +E L PKL H++Y+TEP ++ELAAKER 
Sbjct: 805 PVKVNQKQNGTHENH--GGDKNGSHSSPSGADIESLMPKLHHSEYFTEPRIQELAAKERV 862

Query: 79  EPGYCSRVRDFAVGRHDYGSIKFIGETNVRGLDLESIVEFNNREVIVYKDDSKKPPVGEG 138
           E GYC RV+DF VGRH YGSIKF+GET+V  LDLE +V+F NREV VY D+SKKPPVG+G
Sbjct: 863 EQGYCKRVKDFVVGRHGYGSIKFLGETDVCRLDLEMVVQFKNREVNVYMDESKKPPVGQG 922

Query: 139 LNKAAVVTLLNIKCMNKKTGEQYTEGPRVGKYKEILVKKAEEQGAEFISFDAAKGEWKFR 198
           LNK AVVTLLNIKCM+KKTG Q  EG R+ KYKE+L +KA EQGA+F+S+D   GEW F+
Sbjct: 923 LNKPAVVTLLNIKCMDKKTGTQVMEGERLDKYKEMLKRKAGEQGAQFVSYDPVNGEWTFK 982

Query: 199 VKHFSSYGFGE 209
           V+HFSSY  G+
Sbjct: 983 VEHFSSYKLGD 993



>AT1G80680.1 | chr1:30324219-30328489 FORWARD LENGTH=1047
          Length = 1046

 Score =  142 bits (359), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 76/158 (48%), Positives = 97/158 (61%), Gaps = 6/158 (3%)

Query: 56  PKLVHADYYTEPSLEELAAKERAEPGYCSRVRDFAVGRHDYGSIKFIGETNVRGLDLESI 115
           P L   DY+ +P + EL  +E   P YCSRV DF +GR  YG I+F+G T+VR LDL+ I
Sbjct: 47  PMLNSPDYFLKPCINELVEREIESPDYCSRVPDFTIGRIGYGYIRFLGNTDVRRLDLDHI 106

Query: 116 VEFNNREVIVYKDDSKKPPVGEGLNKAAVVTLLNIKCMNKKTGEQYTEGPRVGKYKEILV 175
           V+F+  EVIVY D+S KP VGEGLNKAA VTL+ +   +   G+Q     +V      L 
Sbjct: 107 VKFHRHEVIVYDDESSKPVVGEGLNKAAEVTLV-VNIPDLTWGKQ-----QVNHIAYKLK 160

Query: 176 KKAEEQGAEFISFDAAKGEWKFRVKHFSSYGFGEAEID 213
           +  E QGA FISFD   G WKF V HFS +G  + E +
Sbjct: 161 QSTERQGATFISFDPDNGLWKFFVPHFSRFGLSDDEAE 198



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,869,048
Number of extensions: 203041
Number of successful extensions: 371
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 3
Length of query: 215
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 121
Effective length of database: 8,529,465
Effective search space: 1032065265
Effective search space used: 1032065265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)