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Os12g0166000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase S59, nucleoporin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.6 (0.0135) R2 : 0.43
β1 : 0.817 (0.0495) R2dD : 0.353 R2D : 0.21
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.332 (0.0289) R2dN8 : 0.221 R2N8 : 0.0775
σ : 0.254
deviance : 29.51
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.79 0.224 12.6 0.729 0.228 0.432 0.0232 0.153 0.426 21.9 89.84 1414 -- --
22.85 0.223 12.6 0.745 0.23 0.432 0.029 -- 0.423 21.9 89.74 1417 -- --
22.79 0.222 12.6 0.729 0.227 0.43 -- 0.156 0.424 22 89.69 1414 -- --
22.85 0.223 12.6 0.747 0.228 0.431 -- -- 0.428 21.9 89.83 1417 -- --
25.85 0.237 12.6 0.724 -- 0.425 -- 0.112 0.427 -- 89.11 1438 -- --
26.63 0.242 12.6 0.814 0.219 -- -0.018 -- 0.331 22 -- -- -- --
26.63 0.242 12.6 0.815 0.219 -- -- -- 0.331 22 -- -- -- --
25.87 0.237 12.6 0.749 -- 0.42 -- -- 0.425 -- 89.1 1439 -- --
36.54 0.282 12.6 -- 0.306 0.67 -- -- 0.396 21.3 88.64 1988 -- --
29.51 0.254 12.6 0.817 -- -- -- -- 0.332 -- -- -- -- --
44.12 0.311 12.6 -- 0.222 -- -- -- 0.241 22.2 -- -- -- --
39.93 0.294 12.6 -- -- 0.607 -- -- 0.37 -- 87.07 1519 -- --
47.13 0.32 12.6 -- -- -- -- -- 0.241 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.97 wind 9.0 14400 < th dose independent rect. 10 1
2 21.12 wind 9.0 14400 > th dose independent rect. 10 1
3 21.12 precipitation 0.1 14400 > th dose dependent rect. 17 1
4 21.28 precipitation 0.1 14400 > th dose dependent rect. 13 4
7 21.33 precipitation 0.1 14400 > th dose independent rect. 13 4
9 21.34 precipitation 0.1 14400 < th dose independent rect. 13 4
10 21.34 precipitation 0.1 14400 < th dose dependent rect. 13 4
15 21.36 precipitation 0.1 14400 > th dose independent rect. 16 1
17 21.38 precipitation 0.1 14400 < th dose independent rect. 16 1
20 21.38 precipitation 0.1 14400 < th dose dependent rect. 16 1
25 21.40 precipitation 0.1 14400 > th dose dependent rect. 19 1
26 21.41 humidity 80.0 14400 > th dose independent rect. 13 1
28 21.42 wind 3.0 14400 < th dose dependent rect. 21 7
30 21.44 wind 3.0 14400 < th dose dependent rect. 20 9
32 21.46 humidity 80.0 14400 > th dose independent rect. 13 3
40 21.50 wind 3.0 14400 < th dose dependent rect. 21 4
41 21.52 precipitation 0.1 14400 > th dose independent rect. 19 1
47 21.56 humidity 80.0 14400 > th dose dependent rect. 13 1
48 21.57 precipitation 0.1 14400 < th dose independent rect. 19 1
49 21.57 precipitation 0.1 14400 < th dose dependent rect. 19 1
59 21.66 wind 3.0 43200 < th dose dependent rect. 23 5
67 21.70 wind 1.0 43200 < th dose independent rect. 5 2
72 21.72 wind 3.0 43200 < th dose dependent rect. 24 3
74 21.73 precipitation 0.1 4320 > th dose dependent rect. 2 15
75 21.74 precipitation 0.1 4320 > th dose dependent rect. 23 18
80 21.76 wind 3.0 14400 < th dose dependent rect. 21 15
98 21.82 wind 3.0 14400 < th dose independent rect. 22 6
103 21.83 wind 1.0 43200 > th dose independent rect. 5 1
104 21.83 wind 9.0 14400 > th dose dependent rect. 10 1
106 21.84 wind 3.0 14400 < th dose independent rect. 8 1
113 21.86 wind 1.0 43200 < th dose independent rect. 1 7
116 21.87 precipitation 0.1 4320 < th dose independent rect. 2 15
118 21.87 precipitation 0.1 4320 < th dose dependent rect. 2 15
122 21.88 precipitation 0.1 4320 > th dose independent rect. 2 15
132 21.91 precipitation 0.1 4320 > th dose independent rect. 23 18
133 21.91 precipitation 0.1 4320 < th dose independent rect. 23 18
135 21.91 precipitation 0.1 4320 < th dose dependent rect. 23 18
136 21.92 wind 1.0 4320 > th dose independent rect. 17 2
137 21.92 wind 1.0 43200 < th dose independent rect. 3 5
148 21.94 humidity 80.0 14400 < th dose independent rect. 13 2
149 21.94 humidity 80.0 14400 > th dose independent rect. 10 6
153 21.96 wind 3.0 14400 > th dose independent rect. 8 1
158 21.97 wind 3.0 14400 < th dose dependent sin 9 NA
164 21.98 wind 1.0 43200 < th dose dependent rect. 5 1
167 21.98 precipitation 0.1 4320 > th dose dependent rect. 2 12
186 22.02 temperature 20.0 1440 > th dose dependent rect. 1 2
193 22.03 wind 3.0 14400 < th dose independent rect. 22 9
200 22.04 wind 1.0 43200 > th dose independent rect. 1 7
216 22.06 wind 3.0 14400 < th dose independent rect. 22 13
234 22.09 wind 3.0 14400 < th dose independent rect. 22 15
264 22.13 wind 3.0 14400 < th dose independent rect. 19 12
269 22.14 humidity 80.0 14400 > th dose independent rect. 10 1
273 22.14 precipitation 0.1 14400 > th dose independent rect. 13 7
279 22.15 temperature 20.0 4320 > th dose independent rect. 20 3
289 22.16 precipitation 0.1 14400 < th dose independent rect. 13 7
291 22.16 wind 3.0 14400 < th dose independent rect. 19 14
295 22.16 precipitation 0.1 14400 < th dose dependent rect. 13 7
297 22.16 wind 3.0 14400 < th dose dependent rect. 2 10
318 22.20 wind 1.0 43200 > th dose independent rect. 3 5
320 22.20 wind 3.0 14400 > th dose independent rect. 22 6
332 22.23 precipitation 0.1 14400 > th dose independent rect. 15 5
333 22.23 wind 3.0 14400 > th dose independent rect. 22 13
340 22.24 temperature 20.0 4320 < th dose independent rect. 20 3
341 22.24 precipitation 0.1 14400 < th dose independent rect. 15 5
348 22.24 precipitation 0.1 14400 < th dose dependent rect. 15 5
359 22.26 wind 3.0 14400 < th dose independent sin 9 NA
361 22.26 wind 3.0 14400 < th dose independent rect. 24 3
363 22.26 wind 3.0 14400 > th dose independent rect. 22 9
409 22.29 humidity 80.0 14400 < th dose independent rect. 10 5
416 22.29 precipitation 0.1 14400 > th dose dependent rect. 13 1
423 22.30 precipitation 0.1 4320 < th dose independent rect. 2 12
428 22.30 precipitation 0.1 4320 < th dose dependent rect. 2 12
436 22.31 precipitation 0.1 4320 > th dose independent rect. 2 12
452 22.32 humidity 90.0 1440 > th dose dependent rect. 4 17
499 22.36 precipitation 0.1 4320 > th dose dependent sin 6 NA
504 22.36 precipitation 0.1 4320 > th dose dependent rect. 18 23
508 22.37 wind 3.0 14400 > th dose independent rect. 19 14
510 22.37 precipitation 0.1 14400 > th dose independent rect. 3 17
530 22.38 precipitation 0.1 14400 < th dose independent rect. 3 17
536 22.38 precipitation 0.1 14400 < th dose dependent rect. 3 17
537 22.39 wind 3.0 14400 < th dose independent rect. 22 1
547 22.40 wind 3.0 14400 > th dose independent rect. 19 12
564 22.41 precipitation 0.1 4320 > th dose dependent rect. 2 8
581 22.42 humidity 90.0 1440 > th dose dependent sin 0 NA
582 22.42 temperature 20.0 1440 > th dose dependent rect. 4 1
604 22.44 humidity 80.0 14400 < th dose independent rect. 10 1
606 22.44 wind 7.0 4320 < th dose independent rect. 20 8
621 22.45 humidity 80.0 1440 < th dose independent rect. 11 1
640 22.46 wind 3.0 14400 > th dose independent sin 8 NA
653 22.46 precipitation 0.1 4320 > th dose dependent rect. 1 5
660 22.46 humidity 80.0 1440 > th dose dependent rect. 1 14
673 22.47 precipitation 0.1 14400 > th dose dependent rect. 16 4
698 22.49 wind 7.0 4320 > th dose independent rect. 20 8
757 22.52 precipitation 0.1 4320 > th dose dependent rect. 18 16
769 22.53 temperature 25.0 1440 < th dose dependent rect. 17 10
773 22.53 precipitation 0.1 4320 > th dose dependent rect. 18 20
783 22.54 temperature 25.0 1440 < th dose dependent rect. 20 7
786 22.54 precipitation 0.1 4320 > th dose dependent rect. 18 14
801 22.55 precipitation 0.1 14400 > th dose dependent rect. 13 7
807 22.55 precipitation 0.1 4320 > th dose dependent rect. 18 12
837 22.57 precipitation 0.1 4320 < th dose independent sin 5 NA
842 22.57 precipitation 0.1 4320 < th dose dependent sin 5 NA
843 22.57 temperature 25.0 1440 < th dose dependent rect. 21 1
862 22.58 precipitation 0.1 4320 < th dose independent rect. 2 8
867 22.58 precipitation 0.1 4320 < th dose dependent rect. 2 8
882 22.59 precipitation 0.1 4320 > th dose independent sin 5 NA
883 22.59 precipitation 0.1 4320 < th dose independent rect. 3 2
888 22.59 temperature 25.0 1440 < th dose independent rect. 16 11
890 22.59 precipitation 0.1 14400 > th dose independent rect. 23 21
891 22.59 precipitation 0.1 14400 < th dose independent rect. 23 21
895 22.59 precipitation 0.1 4320 < th dose dependent rect. 3 2
914 22.59 precipitation 0.1 14400 < th dose dependent rect. 23 21
915 22.60 wind 1.0 4320 < th dose independent rect. 18 1
917 22.60 precipitation 0.1 4320 < th dose independent rect. 2 6
922 22.60 humidity 90.0 1440 > th dose independent rect. 23 22
923 22.60 precipitation 0.1 4320 > th dose dependent rect. 3 2
925 22.60 precipitation 0.1 4320 < th dose dependent rect. 2 6
934 22.61 humidity 80.0 1440 > th dose independent rect. 11 1
935 22.61 precipitation 0.1 4320 > th dose independent rect. 3 2
940 22.61 precipitation 0.1 4320 > th dose independent rect. 2 8
984 22.63 humidity 90.0 14400 > th dose independent rect. 20 1