BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0166000 Os12g0166000|J033120E13
         (207 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G10390.1  | chr1:3407265-3412045 REVERSE LENGTH=1042           251   2e-67
AT1G59660.1  | chr1:21924693-21929233 FORWARD LENGTH=998          239   5e-64
AT1G80680.1  | chr1:30324219-30328489 FORWARD LENGTH=1047         146   6e-36

>AT1G10390.1 | chr1:3407265-3412045 REVERSE LENGTH=1042
          Length = 1041

 Score =  251 bits (641), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 127/197 (64%), Positives = 152/197 (77%), Gaps = 12/197 (6%)

Query: 19   NGIQRDDRASNEP---DTVTRH---------GNGTSVERLVPKLVHADYYTEPSLEELAA 66
            NG  R D+AS +     T++ H          +G  +E L+PKL  +DY+TEP ++ELAA
Sbjct: 840  NGTTRSDQASEKERPYKTLSGHRAGEAAIVYEHGADIEALMPKLRQSDYFTEPRIQELAA 899

Query: 67   KERAEPGYCSRVRDFAVGRHDYGSIKFIGETDVRGLDLESIVEFNNREVIVYKDDSKKPP 126
            KERA+PGYC RVRDF VGRH YGSIKF+GETDVR LDLES+V+FN REVIVY D+SKKP 
Sbjct: 900  KERADPGYCRRVRDFVVGRHGYGSIKFMGETDVRRLDLESLVQFNTREVIVYMDESKKPA 959

Query: 127  VGEGLNKAAVVTLLNIKCMNKKTGDQYTEGPRVDKYKEMLVKKAEEQGAEFISFDAVNGE 186
            VG+GLNK A VTLLNIKC++KKTG Q+TEG RV+KYK ML KKAE QGAEF+SFD V GE
Sbjct: 960  VGQGLNKPAEVTLLNIKCIDKKTGKQFTEGERVEKYKMMLKKKAEAQGAEFVSFDPVKGE 1019

Query: 187  WKFRVKHFSSYGFGEAE 203
            WKFRV+HFSSY  G+ +
Sbjct: 1020 WKFRVEHFSSYKLGDED 1036



>AT1G59660.1 | chr1:21924693-21929233 FORWARD LENGTH=998
          Length = 997

 Score =  239 bits (611), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 113/163 (69%), Positives = 136/163 (83%)

Query: 39  NGTSVERLVPKLVHADYYTEPSLEELAAKERAEPGYCSRVRDFAVGRHDYGSIKFIGETD 98
           +G  +E L+PKL H++Y+TEP ++ELAAKER E GYC RV+DF VGRH YGSIKF+GETD
Sbjct: 831 SGADIESLMPKLHHSEYFTEPRIQELAAKERVEQGYCKRVKDFVVGRHGYGSIKFLGETD 890

Query: 99  VRGLDLESIVEFNNREVIVYKDDSKKPPVGEGLNKAAVVTLLNIKCMNKKTGDQYTEGPR 158
           V  LDLE +V+F NREV VY D+SKKPPVG+GLNK AVVTLLNIKCM+KKTG Q  EG R
Sbjct: 891 VCRLDLEMVVQFKNREVNVYMDESKKPPVGQGLNKPAVVTLLNIKCMDKKTGTQVMEGER 950

Query: 159 VDKYKEMLVKKAEEQGAEFISFDAVNGEWKFRVKHFSSYGFGE 201
           +DKYKEML +KA EQGA+F+S+D VNGEW F+V+HFSSY  G+
Sbjct: 951 LDKYKEMLKRKAGEQGAQFVSYDPVNGEWTFKVEHFSSYKLGD 993



>AT1G80680.1 | chr1:30324219-30328489 FORWARD LENGTH=1047
          Length = 1046

 Score =  146 bits (369), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 78/157 (49%), Positives = 98/157 (62%), Gaps = 6/157 (3%)

Query: 47  VPKLVHADYYTEPSLEELAAKERAEPGYCSRVRDFAVGRHDYGSIKFIGETDVRGLDLES 106
           +P L   DY+ +P + EL  +E   P YCSRV DF +GR  YG I+F+G TDVR LDL+ 
Sbjct: 46  LPMLNSPDYFLKPCINELVEREIESPDYCSRVPDFTIGRIGYGYIRFLGNTDVRRLDLDH 105

Query: 107 IVEFNNREVIVYKDDSKKPPVGEGLNKAAVVTLLNIKCMNKKTGDQYTEGPRVDKYKEML 166
           IV+F+  EVIVY D+S KP VGEGLNKAA VTL+ +   +   G Q     +V+     L
Sbjct: 106 IVKFHRHEVIVYDDESSKPVVGEGLNKAAEVTLV-VNIPDLTWGKQ-----QVNHIAYKL 159

Query: 167 VKKAEEQGAEFISFDAVNGEWKFRVKHFSSYGFGEAE 203
            +  E QGA FISFD  NG WKF V HFS +G  + E
Sbjct: 160 KQSTERQGATFISFDPDNGLWKFFVPHFSRFGLSDDE 196



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,758,946
Number of extensions: 199014
Number of successful extensions: 349
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 3
Length of query: 207
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 113
Effective length of database: 8,529,465
Effective search space: 963829545
Effective search space used: 963829545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 109 (46.6 bits)