BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0165700 Os12g0165700|AK099823
         (340 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0165700  Transcription factors TFIIS, elongin A, CRSP70...   541   e-154
Os11g0166800  RNA polymerase II transcription factor SIII su...   375   e-104
Os12g0582600  Transcription factors TFIIS, elongin A, CRSP70...    89   7e-18

>Os12g0165700 Transcription factors TFIIS, elongin A, CRSP70, conserved domain
           containing protein
          Length = 340

 Score =  541 bits (1393), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 268/303 (88%), Positives = 268/303 (88%)

Query: 38  ELRARRDGIVERLYATAAGGRCGNCDAPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 97
           ELRARRDGIVERLYATAAGGRCGNCDAPR                               
Sbjct: 38  ELRARRDGIVERLYATAAGGRCGNCDAPRSAEPEAAAAAAASPASPDEDADVDGLDDDEG 97

Query: 98  XXXXSKILAIRDFLEDPDQSEDELVSLLQSLADMDITYKALQETDIGRHVNGLRKHPSGE 157
               SKILAIRDFLEDPDQSEDELVSLLQSLADMDITYKALQETDIGRHVNGLRKHPSGE
Sbjct: 98  GGMESKILAIRDFLEDPDQSEDELVSLLQSLADMDITYKALQETDIGRHVNGLRKHPSGE 157

Query: 158 VRQLVKLLVRKWKEIVDDWVRLHNSGGDGGSSVLTDGDSPDKIQGRSYQNAQVSDFKYSP 217
           VRQLVKLLVRKWKEIVDDWVRLHNSGGDGGSSVLTDGDSPDKIQGRSYQNAQVSDFKYSP
Sbjct: 158 VRQLVKLLVRKWKEIVDDWVRLHNSGGDGGSSVLTDGDSPDKIQGRSYQNAQVSDFKYSP 217

Query: 218 SPQRHNGLSSERSSNNNGVESMIEKRRTSPAPTYHNNKQNNSIGYSTTSSSAPVRTVREQ 277
           SPQRHNGLSSERSSNNNGVESMIEKRRTSPAPTYHNNKQNNSIGYSTTSSSAPVRTVREQ
Sbjct: 218 SPQRHNGLSSERSSNNNGVESMIEKRRTSPAPTYHNNKQNNSIGYSTTSSSAPVRTVREQ 277

Query: 278 KDNLMDLEKLDSARKRLQENYQEAQNAKKQRTIQVMDIHDIPKPKNRNAFIRKGGGGLPG 337
           KDNLMDLEKLDSARKRLQENYQEAQNAKKQRTIQVMDIHDIPKPKNRNAFIRKGGGGLPG
Sbjct: 278 KDNLMDLEKLDSARKRLQENYQEAQNAKKQRTIQVMDIHDIPKPKNRNAFIRKGGGGLPG 337

Query: 338 KHR 340
           KHR
Sbjct: 338 KHR 340



>Os11g0166800 RNA polymerase II transcription factor SIII subunit A family
           protein
          Length = 238

 Score =  375 bits (963), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/240 (76%), Positives = 210/240 (87%), Gaps = 4/240 (1%)

Query: 103 KILAIRDFLEDPDQSEDELVSLLQSLADMDITYKALQETDIGRHVNGLRKHPSGEVRQLV 162
           KILAI+DFLED DQSEDEL+SLLQSLADMDITYKALQETDIGRHVNGLRKHPSGEVR LV
Sbjct: 1   KILAIKDFLEDEDQSEDELLSLLQSLADMDITYKALQETDIGRHVNGLRKHPSGEVRLLV 60

Query: 163 KLLVRKWKEIVDDWVRLHNSGGDGGSSVLTDGDSPDKIQGRSYQNAQVSDFKYSPSPQRH 222
           K L+RKWKEIVDDWVRLHNS GD  +S++TDG+SP+KIQG++ Q++QVS+FKYSPSP RH
Sbjct: 61  KQLIRKWKEIVDDWVRLHNSSGDASNSIITDGNSPEKIQGKNQQSSQVSEFKYSPSPSRH 120

Query: 223 NGLSSERSSNNNGVESMIE-KRRTSPAPTYHNNKQNNSIGYSTTSSSAPVRTVREQKDNL 281
           N  SSER S  NG+ S+   K R SPAP +HN +Q N+  +STTSSSAP R V+EQKD+ 
Sbjct: 121 NNSSSERVS--NGIASIAATKHRASPAPAHHNARQINNTHHSTTSSSAPARMVKEQKDSH 178

Query: 282 MDLEKLDSARKRLQENYQEAQNAKKQRTIQVMDIHDIPKPKNRNAFIRKG-GGGLPGKHR 340
           +DLE+LDSARKRLQENYQEAQNAKKQRTIQVMDI++IPKPKNRNAFIRKG GGG P +HR
Sbjct: 179 LDLERLDSARKRLQENYQEAQNAKKQRTIQVMDINEIPKPKNRNAFIRKGNGGGFPARHR 238



>Os12g0582600 Transcription factors TFIIS, elongin A, CRSP70, conserved domain
           containing protein
          Length = 194

 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/46 (89%), Positives = 43/46 (93%)

Query: 116 QSEDELVSLLQSLADMDITYKALQETDIGRHVNGLRKHPSGEVRQL 161
           + EDEL+SLLQSLADMDI YKALQETDIGRHVNGLRKHPSGEVR L
Sbjct: 85  EPEDELLSLLQSLADMDIPYKALQETDIGRHVNGLRKHPSGEVRLL 130



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.130    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,319,493
Number of extensions: 430815
Number of successful extensions: 1262
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1261
Number of HSP's successfully gapped: 4
Length of query: 340
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 238
Effective length of database: 11,709,973
Effective search space: 2786973574
Effective search space used: 2786973574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 156 (64.7 bits)