Os11g0166800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA polymerase II transcription factor SIII subunit A family protein.
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Os11g0166800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA polymerase II transcription factor SIII subunit A family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.07 | 0.315 | 10.5 | -1.59 | 0.956 | 1.09 | 0.557 | 4.87 | -0.368 | 2.33 | 0.8901 | 1450 | -- | -- |
| 53.79 | 0.342 | 10.5 | -1.11 | 0.914 | 0.383 | 0.619 | -- | -0.247 | 2.31 | 15.77 | 3021 | -- | -- |
| 45.36 | 0.314 | 10.5 | -1.57 | 0.862 | 1.15 | -- | 5.08 | -0.365 | 2.52 | 0.884 | 1491 | -- | -- |
| 55.16 | 0.346 | 10.5 | -1.17 | 0.965 | 0.366 | -- | -- | -0.265 | 2.19 | 25.07 | 4292 | -- | -- |
| 58.84 | 0.357 | 10.5 | -1.2 | -- | 1.81 | -- | 4.27 | -0.245 | -- | 1.044 | 1742 | -- | -- |
| 56.78 | 0.353 | 10.5 | -1.11 | 0.944 | -- | 0.6 | -- | -0.308 | 2.25 | -- | -- | -- | -- |
| 58.11 | 0.357 | 10.5 | -1.13 | 0.945 | -- | -- | -- | -0.311 | 2.24 | -- | -- | -- | -- |
| 59.02 | 0.358 | 10.5 | -1.15 | -- | 0.83 | -- | -- | -0.275 | -- | 6.228 | 319 | -- | -- |
| 87.55 | 0.436 | 10.4 | -- | 0.968 | 0.444 | -- | -- | -0.11 | 1.7 | 35.75 | 2496 | -- | -- |
| 111.28 | 0.493 | 10.5 | -1.09 | -- | -- | -- | -- | -0.288 | -- | -- | -- | -- | -- |
| 91.76 | 0.448 | 10.4 | -- | 0.924 | -- | -- | -- | -0.185 | 2.22 | -- | -- | -- | -- |
| 89.23 | 0.44 | 10.4 | -- | -- | 0.873 | -- | -- | -0.136 | -- | 15.7 | 278 | -- | -- |
| 142.63 | 0.557 | 10.4 | -- | -- | -- | -- | -- | -0.167 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.60 | temperature | 25 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 12 | 42.89 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 26 | 43.09 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 30 | 43.20 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 33 | 43.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 40 | 43.26 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 43 | 43.28 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 44 | 43.28 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 49 | 43.29 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 50 | 43.29 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 15 |
| 51 | 43.30 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 64 | 43.30 | temperature | 30 | 14400 | < th | dose independent | rect. | 22 | 12 |
| 76 | 43.32 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 81 | 43.37 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 87 | 43.39 | humidity | 70 | 43200 | > th | dose dependent | rect. | 8 | 22 |
| 107 | 43.48 | humidity | 70 | 43200 | > th | dose dependent | rect. | 1 | 13 |
| 144 | 43.51 | humidity | 70 | 43200 | > th | dose dependent | rect. | 2 | 11 |
| 163 | 43.55 | temperature | 20 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 165 | 43.55 | humidity | 70 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 193 | 43.58 | temperature | 25 | 14400 | > th | dose dependent | sin | 7 | NA |
| 197 | 43.59 | temperature | 25 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 204 | 43.59 | humidity | 70 | 43200 | > th | dose dependent | rect. | 21 | 23 |
| 206 | 43.60 | humidity | 70 | 43200 | > th | dose dependent | no | NA | NA |
| 208 | 43.60 | humidity | 70 | 43200 | > th | dose dependent | rect. | 23 | 23 |
| 222 | 43.63 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 235 | 43.65 | humidity | 70 | 43200 | > th | dose dependent | sin | 4 | NA |
| 252 | 43.67 | temperature | 30 | 14400 | < th | dose independent | sin | 7 | NA |
| 261 | 43.68 | temperature | 30 | 14400 | > th | dose independent | sin | 8 | NA |
| 285 | 43.70 | temperature | 10 | 14400 | > th | dose dependent | rect. | 5 | 4 |
| 286 | 43.70 | temperature | 30 | 14400 | < th | dose dependent | rect. | 5 | 4 |
| 290 | 43.71 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 321 | 43.75 | temperature | 25 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 337 | 43.76 | temperature | 30 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 383 | 43.79 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 508 | 43.83 | temperature | 20 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 532 | 43.84 | temperature | 10 | 14400 | > th | dose dependent | rect. | 2 | 12 |
| 553 | 43.86 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 571 | 43.86 | temperature | 10 | 14400 | > th | dose dependent | sin | 5 | NA |
| 635 | 43.89 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 902 | 43.97 | temperature | 30 | 14400 | < th | dose dependent | rect. | 20 | 14 |
| 905 | 43.97 | temperature | 25 | 14400 | > th | dose dependent | rect. | 6 | 16 |
| 915 | 43.98 | temperature | 30 | 14400 | < th | dose dependent | sin | 7 | NA |
| 951 | 43.98 | temperature | 10 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 963 | 43.99 | temperature | 25 | 43200 | < th | dose dependent | rect. | 15 | 1 |