Os12g0165700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factors TFIIS, elongin A, CRSP70, conserved domain containing protein.
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Os12g0165700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factors TFIIS, elongin A, CRSP70, conserved domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.68 | 0.296 | 12.4 | -1.06 | 1.04 | -0.436 | -0.28 | -1.89 | 0.263 | 3.4 | 85 | 5506 | -- | -- |
| 42.09 | 0.304 | 12.4 | -0.915 | 0.696 | -0.713 | -0.515 | -- | 0.198 | 4.08 | 85 | 5506 | -- | -- |
| 39.93 | 0.294 | 12.4 | -1.06 | 1.04 | -0.434 | -- | -1.91 | 0.26 | 3.39 | 85 | 5496 | -- | -- |
| 42.84 | 0.307 | 12.4 | -0.909 | 0.697 | -0.704 | -- | -- | 0.201 | 4.12 | 85 | 5496 | -- | -- |
| 56.5 | 0.352 | 12.4 | -0.906 | -- | -1.38 | -- | 0.58 | 0.258 | -- | 184.3 | 4704 | -- | -- |
| 48.69 | 0.327 | 12.4 | -0.946 | 1.01 | -- | -0.411 | -- | 0.22 | 3.49 | -- | -- | -- | -- |
| 49.22 | 0.329 | 12.4 | -0.939 | 1.01 | -- | -- | -- | 0.222 | 3.49 | -- | -- | -- | -- |
| 53.1 | 0.339 | 12.4 | -0.902 | -- | -1.33 | -- | -- | 0.25 | -- | 233.7 | 138 | -- | -- |
| 62.65 | 0.369 | 12.4 | -- | 1.01 | -0.607 | -- | -- | 0.279 | 3.47 | 78 | 1430 | -- | -- |
| 106 | 0.481 | 12.4 | -0.896 | -- | -- | -- | -- | 0.249 | -- | -- | -- | -- | -- |
| 72.44 | 0.398 | 12.4 | -- | 0.989 | -- | -- | -- | 0.326 | 3.5 | -- | -- | -- | -- |
| 74.55 | 0.402 | 12.4 | -- | -- | -1.33 | -- | -- | 0.35 | -- | 121.6 | 141 | -- | -- |
| 127.19 | 0.526 | 12.4 | -- | -- | -- | -- | -- | 0.348 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.50 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 5 | 34.18 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 6 | 34.18 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 7 | 34.40 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 8 | 34.40 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 9 | 34.56 | wind | 3.0 | 14400 | > th | dose independent | rect. | 23 | 7 |
| 10 | 34.58 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 18 | 34.75 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 26 | 34.85 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 4 |
| 39 | 34.95 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 43 | 34.97 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 48 | 35.00 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 51 | 35.01 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 53 | 35.02 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 57 | 35.04 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 24 | 7 |
| 70 | 35.17 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 71 | 35.17 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 80 | 35.20 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 98 | 35.28 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 112 | 35.33 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 123 | 35.38 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 153 | 35.51 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 172 | 35.57 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 185 | 35.64 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 186 | 35.64 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 196 | 35.70 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 206 | 35.74 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 233 | 35.83 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 237 | 35.83 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 242 | 35.84 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 244 | 35.85 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 253 | 35.89 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 263 | 35.91 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 283 | 35.97 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 5 | 7 |
| 311 | 36.05 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 322 | 36.08 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 349 | 36.15 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 14 |
| 350 | 36.16 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 362 | 36.18 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 398 | 36.25 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 6 |
| 426 | 36.32 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 7 | 5 |
| 452 | 36.37 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 8 |
| 462 | 36.39 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 501 | 36.46 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 14 |
| 517 | 36.50 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 522 | 36.51 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 550 | 36.58 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 2 |
| 566 | 36.61 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 570 | 36.62 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 617 | 36.69 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 636 | 36.72 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 676 | 36.80 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 691 | 36.82 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 12 |
| 711 | 36.86 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 12 |
| 714 | 36.86 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 12 |
| 738 | 36.91 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 5 |
| 762 | 36.95 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 5 |
| 773 | 36.97 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 790 | 36.99 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 8 |
| 882 | 37.14 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 13 |
| 888 | 37.15 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 5 |
| 890 | 37.15 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 5 |
| 918 | 37.19 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 974 | 37.28 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 975 | 37.28 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 979 | 37.28 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 7 |