BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0165700 Os12g0165700|AK099823
(340 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G09850.1 | chr5:3063488-3065221 REVERSE LENGTH=354 206 1e-53
AT5G05140.1 | chr5:1520353-1522297 FORWARD LENGTH=437 64 9e-11
AT3G10820.2 | chr3:3387358-3390693 FORWARD LENGTH=581 62 6e-10
>AT5G09850.1 | chr5:3063488-3065221 REVERSE LENGTH=354
Length = 353
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/236 (50%), Positives = 153/236 (64%), Gaps = 10/236 (4%)
Query: 104 ILAIRDFLEDPDQSEDELVSLLQSLADMDITYKALQETDIGRHVNGLRKHPSGEVRQLVK 163
I+ I++ LEDPD SE+ LV LLQ+L DMDIT++ALQETDIGRHVN +RKHPS VR+L K
Sbjct: 127 IVEIKEKLEDPDLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSNNVRRLAK 186
Query: 164 LLVRKWKEIVDDWVRLHNSGGDGGSSVLTDGDSPDKIQGRSYQNAQVSDFKYSPSPQRHN 223
LV+KWKE VD+WV+ + G S++ D DSP + + QV DF YSP PQ N
Sbjct: 187 QLVKKWKETVDEWVKFNQPGDLEPPSLIADEDSPVQKALHNGSRQQVPDFGYSPVPQ--N 244
Query: 224 GLSSERSSNNNGVESMIEKRRTSPAPTYHNNKQNNSIGYSTTSSSAPVRTVREQKDNLMD 283
G SS S N+N E + R +P P +++ S + S + R+++ +D
Sbjct: 245 GYSSS-SKNSNITEPERKPRPVAPQP----RRESPSPAKPSRPSPSQQTIPRDKEHKEVD 299
Query: 284 LEKLDSARKRLQENYQEAQNAKKQRTIQVMDIHDIPKPKNRNAFIRKGGGGLPGKH 339
D+ARKRLQ+NY++A+NAKKQRTIQVMDIHDIPKPK F RKGG G+H
Sbjct: 300 ---FDTARKRLQQNYRQAENAKKQRTIQVMDIHDIPKPKKGGFFPRKGGSSQGGRH 352
>AT5G05140.1 | chr5:1520353-1522297 FORWARD LENGTH=437
Length = 436
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 110 FLEDPDQSEDELVSLLQSLADMDITYKALQETDIGRHVNGLRKHPSGEVRQLVKLLVRKW 169
L D+ L+ L+ L M + L+ T+IG+ VNGLRKH S ++RQL K L+ +W
Sbjct: 148 LLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTEIGKAVNGLRKHSSDKIRQLAKTLIAEW 207
Query: 170 KEIVDDWV 177
KE+VD WV
Sbjct: 208 KELVDQWV 215
>AT3G10820.2 | chr3:3387358-3390693 FORWARD LENGTH=581
Length = 580
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 103 KILAIRDFLEDPDQSEDE-LVSLLQSLADMDITYKALQETDIGRHVNGLRKHPSGEVRQL 161
+++ IRD L + D +D L+ L+ L M ++ L++T+IG+ VNGLR+H S ++ +L
Sbjct: 109 EVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKL 168
Query: 162 VKLLVRKWKEIVDDWV 177
K L +WK +VD W+
Sbjct: 169 AKTLFAEWKRLVDQWM 184
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.130 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,282,977
Number of extensions: 259828
Number of successful extensions: 924
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 923
Number of HSP's successfully gapped: 5
Length of query: 340
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 241
Effective length of database: 8,392,385
Effective search space: 2022564785
Effective search space used: 2022564785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 112 (47.8 bits)