BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0163300 Os12g0163300|AK069765
         (319 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0163300  Armadillo-like helical domain containing protein    585   e-167
Os12g0626100  Armadillo-like helical domain containing protein    493   e-140

>Os12g0163300 Armadillo-like helical domain containing protein
          Length = 319

 Score =  585 bits (1507), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 295/319 (92%), Positives = 295/319 (92%)

Query: 1   MESAEVAASSTFGPTPEMEKFLCDLLLDTAQPIAERFRALFSLRNLHGDGPRCALLQAAR 60
           MESAEVAASSTFGPTPEMEKFLCDLLLDTAQPIAERFRALFSLRNLHGDGPRCALLQAAR
Sbjct: 1   MESAEVAASSTFGPTPEMEKFLCDLLLDTAQPIAERFRALFSLRNLHGDGPRCALLQAAR 60

Query: 61  DSSNLLAHEAAFALGQMQDAEAIPALEAVLKDLSLHPIVRHXXXXXXXXXXXXKSIPLLE 120
           DSSNLLAHEAAFALGQMQDAEAIPALEAVLKDLSLHPIVRH            KSIPLLE
Sbjct: 61  DSSNLLAHEAAFALGQMQDAEAIPALEAVLKDLSLHPIVRHEAAEALGAIGLEKSIPLLE 120

Query: 121 ESLAADPAVEVQETCELALRRIEQQKNAGVSESTTISPFLSVDPALPAKQGLSVHQLREI 180
           ESLAADPAVEVQETCELALRRIEQQKNAGVSESTTISPFLSVDPALPAKQGLSVHQLREI
Sbjct: 121 ESLAADPAVEVQETCELALRRIEQQKNAGVSESTTISPFLSVDPALPAKQGLSVHQLREI 180

Query: 181 LLNEQESMYERYAALFALRNDSRDXXXXXXXXXXXXKSALLKHEVAYVLGQLQNKAASDA 240
           LLNEQESMYERYAALFALRNDSRD            KSALLKHEVAYVLGQLQNKAASDA
Sbjct: 181 LLNEQESMYERYAALFALRNDSRDAAVSAIVAALGAKSALLKHEVAYVLGQLQNKAASDA 240

Query: 241 LSTVLKNVDEHPMVRHEAAEALGSIADQESIALLEEFAKDPEPIVSQSCEVALSMLEYER 300
           LSTVLKNVDEHPMVRHEAAEALGSIADQESIALLEEFAKDPEPIVSQSCEVALSMLEYER
Sbjct: 241 LSTVLKNVDEHPMVRHEAAEALGSIADQESIALLEEFAKDPEPIVSQSCEVALSMLEYER 300

Query: 301 SGKSFEFLFLQTPGVQQES 319
           SGKSFEFLFLQTPGVQQES
Sbjct: 301 SGKSFEFLFLQTPGVQQES 319



>Os12g0626100 Armadillo-like helical domain containing protein
          Length = 302

 Score =  493 bits (1269), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 253/302 (83%), Positives = 259/302 (85%)

Query: 18  MEKFLCDLLLDTAQPIAERFRALFSLRNLHGDGPRCALLQAARDSSNLLAHEAAFALGQM 77
           ME FLCD LLD AQPIAERFRALFSLRNL GD PR ALLQAARDSSNLLAHEAAFALGQM
Sbjct: 1   MEGFLCDRLLDAAQPIAERFRALFSLRNLRGDAPRRALLQAARDSSNLLAHEAAFALGQM 60

Query: 78  QDAEAIPALEAVLKDLSLHPIVRHXXXXXXXXXXXXKSIPLLEESLAADPAVEVQETCEL 137
           QDAEAIPALEAVLKDLSLHPIVRH            KSI LLEESLA DPAVEVQETCEL
Sbjct: 61  QDAEAIPALEAVLKDLSLHPIVRHEAAEALGAIGLEKSISLLEESLAVDPAVEVQETCEL 120

Query: 138 ALRRIEQQKNAGVSESTTISPFLSVDPALPAKQGLSVHQLREILLNEQESMYERYAALFA 197
           A+RRIE+QKN    ES T+SPFLSVDPALPAKQGL V QLR +LLNEQESMYERYAALFA
Sbjct: 121 AIRRIEEQKNTSGVESATVSPFLSVDPALPAKQGLPVEQLRHLLLNEQESMYERYAALFA 180

Query: 198 LRNDSRDXXXXXXXXXXXXKSALLKHEVAYVLGQLQNKAASDALSTVLKNVDEHPMVRHE 257
           LRNDS D            KSALL+HEVAYVLGQLQNKAASDALSTVLKNVDEHPMVRHE
Sbjct: 181 LRNDSGDAAVSAIVAALGVKSALLRHEVAYVLGQLQNKAASDALSTVLKNVDEHPMVRHE 240

Query: 258 AAEALGSIADQESIALLEEFAKDPEPIVSQSCEVALSMLEYERSGKSFEFLFLQTPGVQQ 317
           AAEALGSIADQESIALLEEFAKDPEPIVSQSCEVALSMLEYERSGK+FEFLF QTP VQQ
Sbjct: 241 AAEALGSIADQESIALLEEFAKDPEPIVSQSCEVALSMLEYERSGKAFEFLFPQTPQVQQ 300

Query: 318 ES 319
           ES
Sbjct: 301 ES 302



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.129    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,586,792
Number of extensions: 290213
Number of successful extensions: 728
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 714
Number of HSP's successfully gapped: 2
Length of query: 319
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 218
Effective length of database: 11,762,187
Effective search space: 2564156766
Effective search space used: 2564156766
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)