Os12g0163300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os12g0163300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.6 | 0.247 | 9.16 | -0.659 | 0.195 | -1.21 | 0.352 | -1.02 | -0.163 | 21.1 | 16.71 | 483 | -- | -- |
| 27.98 | 0.246 | 9.14 | -0.527 | 0.191 | -1.09 | 0.17 | -- | -0.122 | 20 | 20.27 | 426 | -- | -- |
| 27.95 | 0.246 | 9.15 | -0.631 | 0.185 | -1.22 | -- | -0.803 | -0.152 | 20.8 | 16.5 | 464 | -- | -- |
| 28.05 | 0.247 | 9.14 | -0.53 | 0.195 | -1.1 | -- | -- | -0.121 | 19.4 | 20.46 | 406 | -- | -- |
| 29.25 | 0.252 | 9.15 | -0.663 | -- | -1.08 | -- | -0.775 | -0.174 | -- | 16.9 | 390 | -- | -- |
| 49.39 | 0.329 | 9.17 | -0.783 | 0.255 | -- | 0.358 | -- | -0.314 | 4.52 | -- | -- | -- | -- |
| 49.72 | 0.33 | 9.17 | -0.785 | 0.258 | -- | -- | -- | -0.315 | 4.64 | -- | -- | -- | -- |
| 29.4 | 0.253 | 9.14 | -0.558 | -- | -0.979 | -- | -- | -0.145 | -- | 19.88 | 363 | -- | -- |
| 34.76 | 0.275 | 9.12 | -- | 0.2 | -1.27 | -- | -- | -0.0659 | 18.1 | 19.1 | 373 | -- | -- |
| 53.27 | 0.341 | 9.17 | -0.775 | -- | -- | -- | -- | -0.309 | -- | -- | -- | -- | -- |
| 65.97 | 0.38 | 9.15 | -- | 0.244 | -- | -- | -- | -0.228 | 4.73 | -- | -- | -- | -- |
| 36.42 | 0.281 | 9.12 | -- | -- | -1.31 | -- | -- | -0.0569 | -- | 16.1 | 417 | -- | -- |
| 69.12 | 0.388 | 9.15 | -- | -- | -- | -- | -- | -0.223 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.24 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 15 |
| 44 | 25.50 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 76 | 26.61 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 197 | 27.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 245 | 28.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 7 |
| 255 | 28.20 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 6 |
| 261 | 28.21 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 296 | 28.31 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 299 | 28.32 | temperature | 20 | 270 | > th | dose dependent | sin | 23 | NA |
| 332 | 28.40 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 342 | 28.42 | temperature | 20 | 1440 | > th | dose dependent | sin | 3 | NA |
| 366 | 28.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 4 |
| 385 | 28.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 397 | 28.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 412 | 28.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 8 |
| 425 | 28.55 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 8 |
| 480 | 28.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 501 | 28.61 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 20 |
| 801 | 28.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 16 |
| 907 | 28.86 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 927 | 28.87 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 23 |
| 931 | 28.88 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |