BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0158400 Os12g0158400|Os12g0158400
(254 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0158400 Protein of unknown function DUF623, plant doma... 216 1e-56
Os11g0156401 Protein of unknown function DUF623, plant doma... 112 4e-25
Os02g0679700 Protein of unknown function DUF623, plant doma... 73 2e-13
>Os12g0158400 Protein of unknown function DUF623, plant domain containing protein
Length = 254
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 122/226 (53%), Positives = 122/226 (53%)
Query: 1 MSTAASXXXXXXXXXXXXXXXXXXXXWRHVPVVDTGCGCRPRRPRQLLMSLPSFLRPSAL 60
MSTAAS WRHVPVVDTGCGCRPRRPRQLLMSLPSFLRPSAL
Sbjct: 1 MSTAASRARRGGGGGGGRHFPVGGGRWRHVPVVDTGCGCRPRRPRQLLMSLPSFLRPSAL 60
Query: 61 KPPVPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQYPYYGKXXXXXXXPV 120
KPPVPR NQYPYYGK PV
Sbjct: 61 KPPVPRSTSSHSSSFFPSSASTASFSSSSAATYTTTYSSSSATNQYPYYGKAAAAAAAPV 120
Query: 121 TVTTNNHGXXXXXXXXXXXXXXXXXXXXXXXXYEKMXXXXXXXXXXXXXXXXSSDPRADF 180
TVTTNNHG YEKM SSDPRADF
Sbjct: 121 TVTTNNHGKSSSSSSSSSAAAAARRRPSRKKRYEKMAAAEEEEDVGVAVEKESSDPRADF 180
Query: 181 RESMVQMVVEMGLCGWDDLRCMLRRLLALNAPRHHAAILTAFAEVC 226
RESMVQMVVEMGLCGWDDLRCMLRRLLALNAPRHHAAILTAFAEVC
Sbjct: 181 RESMVQMVVEMGLCGWDDLRCMLRRLLALNAPRHHAAILTAFAEVC 226
>Os11g0156401 Protein of unknown function DUF623, plant domain containing protein
Length = 246
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/57 (94%), Positives = 54/57 (94%)
Query: 173 SSDPRADFRESMVQMVVEMGLCGWDDLRCMLRRLLALNAPRHHAAILTAFAEVCAQL 229
SSDPRADFRESMVQMVVEMGLC WDDLR MLRRLLALNAP HHAAILTAFAEVCAQL
Sbjct: 173 SSDPRADFRESMVQMVVEMGLCHWDDLRSMLRRLLALNAPAHHAAILTAFAEVCAQL 229
>Os02g0679700 Protein of unknown function DUF623, plant domain containing protein
Length = 281
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 39/53 (73%)
Query: 173 SSDPRADFRESMVQMVVEMGLCGWDDLRCMLRRLLALNAPRHHAAILTAFAEV 225
S DP DFR+SM+QM+VE G+ +DLR MLRR L LNAP HH IL AFAE+
Sbjct: 178 SDDPLGDFRQSMLQMIVENGIVAGEDLREMLRRFLTLNAPHHHDVILRAFAEI 230
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.136 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,425,367
Number of extensions: 111796
Number of successful extensions: 444
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 3
Length of query: 254
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 155
Effective length of database: 11,866,615
Effective search space: 1839325325
Effective search space used: 1839325325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)