BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0156000 Os12g0156000|Os12g0156000
         (165 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0156000  Protein of unknown function DUF584 family protein   185   1e-47
Os11g0154300  Protein of unknown function DUF584 family protein   102   2e-22

>Os12g0156000 Protein of unknown function DUF584 family protein
          Length = 165

 Score =  185 bits (470), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 108/165 (65%), Positives = 108/165 (65%)

Query: 1   MDRLLLFRPRKPXXXXXXXXXXDGDLLERDVXXXXXXXXXXXXXXXDDEGSKKKKRAGPA 60
           MDRLLLFRPRKP          DGDLLERDV               DDEGSKKKKRAGPA
Sbjct: 1   MDRLLLFRPRKPASSSSVAAVADGDLLERDVLWPASSAPGLLAALPDDEGSKKKKRAGPA 60

Query: 61  AVRSASRPVPETAPLTPTAGAARSAPVRIPSEXXXXXXXXXXXXXXQSSVGGEDGDAAMX 120
           AVRSASRPVPETAPLTPTAGAARSAPVRIPSE              QSSVGGEDGDAAM 
Sbjct: 61  AVRSASRPVPETAPLTPTAGAARSAPVRIPSEAAAAAGRRGRWAAAQSSVGGEDGDAAMV 120

Query: 121 XXXXXXXXXXXXXXXXXLEGAGRTLKGRDLRRVRNAVLRRTGFLD 165
                            LEGAGRTLKGRDLRRVRNAVLRRTGFLD
Sbjct: 121 VPPHEVVARRAAAHSSVLEGAGRTLKGRDLRRVRNAVLRRTGFLD 165



>Os11g0154300 Protein of unknown function DUF584 family protein
          Length = 171

 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/176 (44%), Positives = 93/176 (52%), Gaps = 16/176 (9%)

Query: 1   MDRLLLFRPRKPXXXXXXXXXX--DGDLLERDVXXXXXXXXXXXXXXXDDEGSKKKKR-- 56
           M+RLL FRP KP            DGDLLE DV               +++G +++KR  
Sbjct: 1   MERLLHFRPPKPTSANAVAAAATADGDLLELDVLWPASRAPGLLAALPEEDGKRRRKRGG 60

Query: 57  --AGPAAVRSASRPVPETAPLT-----PTAGAARSAPVRIPSEXXXXXXXXXXXXXXQSS 109
             +G  AVRSA+RP+PETA LT       A  A+SAPVRIPSE               + 
Sbjct: 61  SGSGSVAVRSAARPIPETAALTLVPSSSAAAMAKSAPVRIPSEAAAARRGVMWA----AQ 116

Query: 110 VGGEDGDAAMXXXXXXXXXXXXXXXXXXLEGAGRTLKGRDLRRVRNAVLRRTGFLD 165
            GGEDG+AAM                  LEG+GRTLKGRDL RVRNAVLRRTGFLD
Sbjct: 117 AGGEDGEAAMVPPHEIVARRAAAHSSV-LEGSGRTLKGRDLHRVRNAVLRRTGFLD 171



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,044,173
Number of extensions: 131687
Number of successful extensions: 799
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 792
Number of HSP's successfully gapped: 3
Length of query: 165
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 72
Effective length of database: 12,179,899
Effective search space: 876952728
Effective search space used: 876952728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 152 (63.2 bits)