BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0154400 Os12g0154400|J075056C07
         (92 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0530400  t-snare domain containing protein                   105   7e-24
Os12g0154400  t-snare domain containing protein                   104   1e-23

>Os04g0530400 t-snare domain containing protein
          Length = 316

 Score =  105 bits (262), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 57/92 (61%)

Query: 1   VELTNLLDAVQETETKMIEMSALNHLMSTHVXXXXXXXXXXXXXXVEATNNVERGNKELS 60
           VELTNLLDAVQETETKMIEMSALNHLMSTHV              VEATNNVERGNKELS
Sbjct: 225 VELTNLLDAVQETETKMIEMSALNHLMSTHVLQQAQQIQYLYDQAVEATNNVERGNKELS 284

Query: 61  QAIQRNXXXXXXXXXXXXXXXXXXXXXDWYSK 92
           QAIQRN                     DWYSK
Sbjct: 285 QAIQRNSSSRTFLLLFFFVLTFSVLFLDWYSK 316



>Os12g0154400 t-snare domain containing protein
          Length = 92

 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 57/92 (61%)

Query: 1  VELTNLLDAVQETETKMIEMSALNHLMSTHVXXXXXXXXXXXXXXVEATNNVERGNKELS 60
          VELTNLLDAVQETETKMIEMSALNHLMSTHV              VEATNNVERGNKELS
Sbjct: 1  VELTNLLDAVQETETKMIEMSALNHLMSTHVLQQAQQIQYLYDQAVEATNNVERGNKELS 60

Query: 61 QAIQRNXXXXXXXXXXXXXXXXXXXXXDWYSK 92
          QAIQRN                     DWYSK
Sbjct: 61 QAIQRNSSSRTFLLLFFFVLTFSVLFLDWYSK 92



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.120    0.319 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,211,308
Number of extensions: 17742
Number of successful extensions: 16
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 2
Length of query: 92
Length of database: 17,035,801
Length adjustment: 61
Effective length of query: 31
Effective length of database: 13,850,747
Effective search space: 429373157
Effective search space used: 429373157
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 149 (62.0 bits)