Os12g0154400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : t-snare domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os12g0154400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : t-snare domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.2 | 0.407 | 6.57 | 0.795 | 0.483 | -1.86 | -0.01 | -4.3 | 0.201 | 7.34 | 0.1708 | 4395 | -- | -- |
| 87.78 | 0.436 | 6.62 | 0.609 | 0.613 | -0.677 | 0.525 | -- | 0.253 | 8.18 | 1.834 | 4380 | -- | -- |
| 74.17 | 0.401 | 6.57 | 0.781 | 0.529 | -1.94 | -- | -4.44 | 0.214 | 6.62 | 0.1688 | 4450 | -- | -- |
| 83.07 | 0.424 | 6.68 | 0.272 | 0.541 | -0.986 | -- | -- | 0.0746 | 6.4 | 1.894 | 4502 | -- | -- |
| 87.13 | 0.435 | 6.57 | 0.851 | -- | -1.93 | -- | -4.58 | 0.231 | -- | 0.17 | 4422 | -- | -- |
| 97.31 | 0.462 | 6.64 | 0.505 | 0.537 | -- | 0.39 | -- | 0.251 | 8.45 | -- | -- | -- | -- |
| 97.74 | 0.463 | 6.64 | 0.516 | 0.54 | -- | -- | -- | 0.25 | 8.24 | -- | -- | -- | -- |
| 95.92 | 0.456 | 6.7 | 0.26 | -- | -0.979 | -- | -- | 0.0526 | -- | 1.962 | 4421 | -- | -- |
| 84.32 | 0.428 | 6.68 | -- | 0.509 | -1.04 | -- | -- | 0.0269 | 7.06 | 1.62 | 4441 | -- | -- |
| 113.85 | 0.499 | 6.65 | 0.52 | -- | -- | -- | -- | 0.256 | -- | -- | -- | -- | -- |
| 104.76 | 0.479 | 6.65 | -- | 0.543 | -- | -- | -- | 0.193 | 8.17 | -- | -- | -- | -- |
| 97.48 | 0.46 | 6.71 | -- | -- | -1.08 | -- | -- | 0.0159 | -- | 1.737 | 4422 | -- | -- |
| 120.98 | 0.513 | 6.67 | -- | -- | -- | -- | -- | 0.199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 8 |
| 2 | 69.29 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 4 | 69.42 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 9 | 69.75 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 17 | 70.15 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 6 |
| 36 | 70.50 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 70 | 71.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 77 | 71.23 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 103 | 71.56 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 121 | 71.79 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 131 | 71.92 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 142 | 72.05 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 155 | 72.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 168 | 72.35 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 205 | 72.63 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 233 | 72.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 2 |
| 500 | 74.41 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 517 | 74.55 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 534 | 74.60 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 567 | 74.79 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 572 | 74.81 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 625 | 75.03 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 629 | 75.07 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 637 | 75.12 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 655 | 75.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 677 | 75.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 700 | 75.50 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 708 | 75.54 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 730 | 75.65 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 12 |
| 753 | 75.79 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 793 | 75.91 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 21 |
| 797 | 75.93 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 9 |
| 805 | 75.95 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 5 |
| 829 | 76.00 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 19 |
| 885 | 76.19 | radiation | 1 | 14400 | < th | dose dependent | sin | 9 | NA |
| 900 | 76.21 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 15 |
| 912 | 76.22 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 12 |
| 938 | 76.27 | radiation | 1 | 14400 | < th | dose dependent | rect. | 11 | 21 |
| 957 | 76.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 14 | 18 |