Os04g0530400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : t-snare domain containing protein.
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Os04g0530400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : t-snare domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.89 | 0.22 | 10.3 | 0.0477 | 0.641 | -0.359 | 0.0629 | 0.873 | 0.3 | 3.81 | 22.7 | 671 | -- | -- |
| 22.17 | 0.221 | 10.3 | 0.166 | 0.708 | -0.567 | -0.0744 | -- | 0.321 | 3.26 | 22.7 | 671 | -- | -- |
| 21.9 | 0.218 | 10.3 | 0.0452 | 0.643 | -0.361 | -- | 0.866 | 0.299 | 3.8 | 22.8 | 654 | -- | -- |
| 22.19 | 0.221 | 10.3 | 0.168 | 0.708 | -0.565 | -- | -- | 0.322 | 3.28 | 22.7 | 671 | -- | -- |
| 43.04 | 0.306 | 10.3 | -0.00936 | -- | -0.53 | -- | 0.724 | 0.254 | -- | 25.6 | 1066 | -- | -- |
| 25.92 | 0.239 | 10.2 | 0.277 | 0.644 | -- | -0.0185 | -- | 0.391 | 3.56 | -- | -- | -- | -- |
| 25.92 | 0.238 | 10.2 | 0.278 | 0.644 | -- | -- | -- | 0.391 | 3.56 | -- | -- | -- | -- |
| 43.52 | 0.307 | 10.3 | 0.11 | -- | -0.704 | -- | -- | 0.309 | -- | 22.4 | 1086 | -- | -- |
| 22.55 | 0.221 | 10.3 | -- | 0.637 | -0.642 | -- | -- | 0.3 | 3.59 | 19.66 | 3410 | -- | -- |
| 49.07 | 0.327 | 10.3 | 0.305 | -- | -- | -- | -- | 0.408 | -- | -- | -- | -- | -- |
| 27.95 | 0.247 | 10.3 | -- | 0.65 | -- | -- | -- | 0.36 | 3.56 | -- | -- | -- | -- |
| 43.79 | 0.308 | 10.3 | -- | -- | -0.774 | -- | -- | 0.285 | -- | 22.36 | 1091 | -- | -- |
| 51.52 | 0.335 | 10.3 | -- | -- | -- | -- | -- | 0.374 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.76 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 2 | 20.78 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 8 | 20.97 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 9 | 20.97 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 10 | 21.02 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 11 | 21.02 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 18 | 21.14 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 19 | 21.15 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 20 | 21.15 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 24 | 21.23 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 18 | 14 |
| 26 | 21.30 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 30 | 21.33 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 31 | 21.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 32 | 21.34 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 35 | 21.38 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 40 | 21.39 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 50 | 21.42 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 51 | 21.42 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 53 | 21.43 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 57 | 21.45 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 59 | 21.45 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 67 | 21.48 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 68 | 21.48 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 73 | 21.50 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 77 | 21.51 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 90 | 21.55 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 91 | 21.56 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 97 | 21.57 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 100 | 21.57 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 20 |
| 102 | 21.58 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 103 | 21.58 | radiation | 40.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 104 | 21.59 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 109 | 21.59 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 14 |
| 112 | 21.60 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 120 | 21.61 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 122 | 21.61 | temperature | 15.0 | 10 | > th | dose independent | rect. | 18 | 14 |
| 137 | 21.64 | radiation | 30.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 162 | 21.67 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 174 | 21.70 | radiation | 30.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 180 | 21.71 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 184 | 21.71 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 187 | 21.72 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 199 | 21.73 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 22 | 7 |
| 208 | 21.74 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 217 | 21.75 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 18 | 14 |
| 230 | 21.75 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 22 |
| 236 | 21.76 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 238 | 21.77 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 299 | 21.84 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 311 | 21.85 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 24 | 5 |
| 314 | 21.85 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 333 | 21.86 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 339 | 21.87 | wind | 9.0 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 345 | 21.87 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 23 | NA |
| 358 | 21.88 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 10 |
| 384 | 21.90 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 399 | 21.91 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 428 | 21.93 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 435 | 21.94 | wind | 9.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 441 | 21.94 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 22 | 7 |
| 473 | 21.96 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 474 | 21.97 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 476 | 21.97 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 17 | NA |
| 491 | 21.97 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 20 | 20 |
| 497 | 21.97 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 498 | 21.97 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 500 | 21.98 | radiation | 20.0 | 270 | < th | dose independent | sin | 5 | NA |
| 502 | 21.98 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 509 | 21.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 10 |
| 513 | 21.98 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 519 | 21.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 10 |
| 534 | 21.99 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 545 | 21.99 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 550 | 21.99 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 20 | 16 |
| 553 | 21.99 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 20 |
| 571 | 22.00 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 595 | 22.01 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 605 | 22.01 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 8 |
| 610 | 22.01 | temperature | 15.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 612 | 22.01 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 636 | 22.02 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 15 |
| 644 | 22.02 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 654 | 22.03 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 665 | 22.03 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 676 | 22.03 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 14 |
| 680 | 22.03 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 21 |
| 685 | 22.04 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 8 |
| 725 | 22.05 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 22 | 10 |
| 726 | 22.05 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 10 |
| 735 | 22.05 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 765 | 22.06 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 16 |
| 787 | 22.07 | radiation | 40.0 | 270 | < th | dose independent | rect. | 10 | 22 |
| 816 | 22.08 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 873 | 22.09 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 896 | 22.10 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 906 | 22.10 | wind | 3.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 907 | 22.10 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 967 | 22.12 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 974 | 22.12 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 978 | 22.12 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 6 |